Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61344g00002 ATGGATAGTGATGTCGAAGATTCTTGGACGTGTGATAATGATTCTTTTGGAATGCACTCTGATAAGGAATTCTCGGAAGAAGAGAATGATGAAGAGCCTTTGAAAGACGATTATGAGAATGTTGAAGACGAAGATCAAACCAAGAGAATACCGGAGCTATCACGAGATGATATAATGCAACTTGAGTTTACAAATGAGGAGGCTGTCCATCGATTCTACAAGACTTATGCAAGGATACATGGTTTTGCAGTCCGGTTGGATGAAGGCGCAAGGAAGGAAAAAGTTGAGAAGGATGAAAGAACTAGGGACCACCGACCCTTGACTCGAAGTATGTGTCCTGCAAAAATCCGTGCAAGCCTCGACCGGAAAAGTTCTAAGTGGAAAGTCGTATCGTTCTATGAGAAACATTCTCATGATTTGGTGGATCCAATGGACGTTAACATGATGCCGGAGTATCGCAAGTTAAGTTAA 471 0.4204 MDSDVEDSWTCDNDSFGMHSDKEFSEEENDEEPLKDDYENVEDEDQTKRIPELSRDDIMQLEFTNEEAVHRFYKTYARIHGFAVRLDEGARKEKVEKDERTRDHRPLTRSMCPAKIRASLDRKSSKWKVVSFYEKHSHDLVDPMDVNMMPEYRKLS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61344g00002 156 MobiDBLite consensus disorder prediction 25 40 - -
Stsc61344g00002 156 Pfam FAR1 DNA-binding domain 88 141 IPR004330 -
Stsc61344g00002 156 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 88 154 - -
Stsc61344g00002 156 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61344g00002 Stsc-Chr61344 12084 12628 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc61344g00002 FAR1 6.9e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61344g00002 - - aip:107620373 179.874