Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61341g00004 ATGAGAGCCACGCCGCCCATTTTCTACTCCACCGTTAAGGTCTTGACAAGGTTTCAAACCAAGAATTATGCTCTGTTAATTCCAGCTCGATTTGCATTAAGAGCTTTCCCCTCCAAGAGGACCGTCGTCACTGTAGTACACGCGAGGGGTCTTCCAATTGACATGAAGTTGCGATGGAGGGGGTCCAACTCTAATGAGGTGTTTCTTACGGGTGGTTGGAAGGCGTTTGCAGCAATGTACAAACTGAGGAATGGTAGTGTCCTGAAGTTTAATGTTTCCTCCGTAGATGAGTCAATTATGTCTATCACTATAATAAACCATTAG 324 0.4506 MRATPPIFYSTVKVLTRFQTKNYALLIPARFALRAFPSKRTVVTVVHARGLPIDMKLRWRGSNSNEVFLTGGWKAFAAMYKLRNGSVLKFNVSSVDESIMSITIINH 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61341g00004 107 CDD B3_DNA 6 90 IPR003340 GO:0003677
Stsc61341g00004 107 Pfam B3 DNA binding domain 13 100 IPR003340 GO:0003677
Stsc61341g00004 107 SUPERFAMILY DNA-binding pseudobarrel domain 9 103 IPR015300 -
Stsc61341g00004 107 ProSiteProfiles B3 DNA-binding domain profile. 10 107 IPR003340 GO:0003677
Stsc61341g00004 107 Gene3D - 2 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61341g00004 Stsc-Chr61341 21464 21859 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc61341g00004 B3 4.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61341g00004 - K09287 adu:127740618 91.6633