Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61341g00002 ATGCAGCCTCGTGCTAAGTCAAAACTGTGGGCAAATGATACATCAAATGTATCTACTATTGACGAGAAACAAAAAGTATCAAAGAAGGGAAGCAAAGACACCTCAGTTGCTAACCCTGCCGATTCAGATCACAGTGATTCATCATCGGATCAACCCAGTAATCATGAAGATGACAAGTCATGTGAAACTAAAGGCAATGAAATCATTTCAGACATGGATTATTTCAAGAGTAGAGTGACGAAGGATTGGTCTGATTCTGAAAGCGATGACAAAGAAGATGACGGTGACAATGATTCAGTATCTACTGTTGATAATGACCAAGAAAATGATGCTAATCCTAGTGAAGGTGAAGAAAATGTTGATAAGAAATCTTCAAAAATATCCCAAACAAATGGTGCCAAAGAGTTAAACCTAAAGGGTCAACCAGATGCTACTGGAGAGGATATTGCCCAGAAAAAGTCTCAAGTGAATTCAGATGTGCAAGGCAGCCAATTTTTGAATTCAGACGATAAGAAAGAAGTTTTTGAGTCATGTCGACTATTTGTCCGGAATTTGCCATATACCACCACTGAGGAGGAACTGGAAGAGCATTTCAGCAAGATTGGTAGTGTTTCACAAGTTCATCTAGTCGTTGATAAAAGTACAAAACGATCCAAAGGAATAGCGTATATTCTTTATGCATTTCCCGAATTTGCAGCCAGGGCACTAGAAGAGTTGGATAATTCTATATTTCAAGGAAGATTGTTGCATGTTATGCCAGCTATCCAGAGACCTTCAGAAAATAAAGAATCCAAGGACCAAGGTGTGAAAACTCTCAAACAAAAGCGAGAAGAAGAGAAGAAAGCTGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCCCTGATACTGTTGTGGAAAACATTGCTCGGAAATATGGTGTCAGTAAAAGTGATTTATTAGACCGAGAAGCGGATGATCTTGCTGTACGTATTGCTCTCGGAGAAACTCAAGTGATTTCAGATACAAAAAAGGCTTTTACAAATGCTGGAGTGAATGTGGAGTTGTTGGAGGCACTTGCCAACGGAAAAGTTGACGGCTTAAAAAGAAGCAATCATGTACTTTTAGTGAAGAACCTGCCATACGGTTCAACGGAAAATGAACTGTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACGAAGACATTGGCTCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCATTTGACATTCTTAGCCAAAGTACAACATCTAGAAATAATGAACTGAATACAGCCGTTGGTGAAAATGATGCCAAGCGGGTGATGTTGGAGCAACATGTGCAAAAAATATCAGAGGATATTGATCCTGACAGAGTGGAGGGTAGGTCCTTGTTTGTCAAGAATCTCAATTTCAAAACAACAGACGAGAGTTTGAAGAAACATTTTATTGAACATNNNNNNNNNNCTATTG 1552 0.3943 MQPRAKSKLWANDTSNVSTIDEKQKVSKKGSKDTSVANPADSDHSDSSSDQPSNHEDDKSCETKGNEIISDMDYFKSRVTKDWSDSESDDKEDDGDNDSVSTVDNDQENDANPSEGEENVDKKSSKISQTNGAKELNLKGQPDATGEDIAQKKSQVNSDVQGSQFLNSDDKKEVFESCRLFVRNLPYTTTEEELEEHFSKIGSVSQVHLVVDKSTKRSKGIAYILYAFPEFAARALEELDNSIFQGRLLHVMPAIQRPSENKESKDQGVKTLKQKREEEKKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVISDTKKAFTNAGVNVELLEALANGKVDGLKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEAAEARAAFRGLAYKRYKDAPLYLEWAPFDILSQSTTSRNNELNTAVGENDAKRVMLEQHVQKISEDIDPDRVEGRSLFVKNLNFKTTDESLKKHFIEHXXXXI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61341g00002 517 Gene3D - 145 290 IPR012677 -
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 255 284 - -
Stsc61341g00002 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 434 IPR000504 GO:0003723
Stsc61341g00002 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 250 IPR000504 GO:0003723
Stsc61341g00002 517 SMART rrm1_1 371 438 IPR000504 GO:0003723
Stsc61341g00002 517 SMART rrm1_1 179 252 IPR000504 GO:0003723
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 48 86 - -
Stsc61341g00002 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 442 IPR000504 GO:0003723
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 259 284 - -
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 87 103 - -
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 7 21 - -
Stsc61341g00002 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 256 IPR000504 GO:0003723
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 31 47 - -
Stsc61341g00002 517 CDD RRM4_RBM19_RRM3_MRD1 370 441 - -
Stsc61341g00002 517 Gene3D - 364 466 IPR012677 -
Stsc61341g00002 517 MobiDBLite consensus disorder prediction 1 156 - -
Stsc61341g00002 517 FunFam Multiple RNA-binding domain-containing protein 1 361 463 - -
Stsc61341g00002 517 SMART rrm2_1 179 252 IPR003954 GO:0003676
Stsc61341g00002 517 SUPERFAMILY RNA-binding domain, RBD 172 259 IPR035979 GO:0003676
Stsc61341g00002 517 PANTHER RNA-BINDING MOTIF PROTEIN 14B 20 322 - -
Stsc61341g00002 517 SUPERFAMILY RNA-binding domain, RBD 369 510 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61341g00002 Stsc-Chr61341 263 7444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61341g00002 180 509 Eukaryotic Initiation Factors Gene Family AT1G49760 27.219 1.30e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61341g00002 K14787 - gmx:100798742 659.062