Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61341g00001 ATGTCGAGGATATGTGTGAAGAATATTCCCAAGTATGCCACAGAGGATCGACTAAGAGAATTCTTTTCTGAGAAAGGCGAAATCACCGATGTCAAGCTTATGCGCACAAAAGATGGTAAGAGTCGCCAATTTGCTTTTATTGGATTTCGGTCGGAACACGAAGCTCAAGAAGCTATTCAATATTTCAATAGATCATACCTTGATACATGTAGAATTACTTGCGAGGAAGCTCGAAAACGAGGTGATGCGGATCTTCCTCGTCCATGGAGTCGGCATTCAGCAAGTAAAGAGAGTAAAGTGACCTCAGATGTCAAGGAACATGCTAGACCAAAAGAGCAAGGACAAGTACATAACTCTGAGGACATTGATGACCCAGAGCTTCAAGAGTTTCTTCAAGTAATGCAGCCTCGTGCTAAGTCAAAACTGTGGGCAAATGATACATCAAATGTATCTACTATTGACGAGAAACAAAAAGTATCAAAGAAGGGAAGCAAAGACACCTCAGTTGCTAACCCTGCCGATTCAGATCACAGTGATTCATCATCGGATCAACCCAGTAATCATGAAGATGACAAGTCATGTGAAACTAAAGGCAATGAAATCATTTCAGACATGGATTATTTCAAGAGTAGAGTGACGAAGGATTGGTCTGATTCTGAAAGCGATGACAAAGAAGATGACGGTGACAATGATTCAGTATCTACTGTTGATAATGACCAAGAAAATGATGCTAATCCTAGTGAAGGTGAAGAAAATGTTGATAAGAAATCTTCAAAAATATCCCAAACAAATGGTGCCAAAGAGTTAAACCTAAAGGGTCAACCAGATGCTACTGGAGAGGATATTGCCCAGAAAAAGTCTCAAGTGAATTCAGATGTGCAAGGCAGCCAATTTTTGAATTCAGACGATAAGAAAGAAGTTTTTGAGTCATGTCGACTATTTGTCCGGAATTTGCCATATACCACCACTGAGGAGGAACTGGAAGAGCATTTCAGCAAGATTGGTAGTGTTTCACAAGTTCATCTAGTCGTTGATAAAAGTACAAAACGATCCAAAGGAATAGCGTATATTCTTTATGCATTTCCCGAATTTGCAGCCAGGGCACTAGAAGAGTTGGATAATTCTATATTTCAAGGAAGATTGTTGCATGTTATGCCAGCTATCCAGAGACCTTCAGAAAATAAAGAATCCAAGGACCAAGGTGTGAAAACTCTCAAACAAAAGCGAGAAGAAGAGAAGAAAGCTGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCCCTGATACTGTTGTGGAAAACATTGCTCGGAAATATGGTGTCAGTAAAAGTGATTTATTAGACCGAGAAGCGGATGATCTTGCTGTACGTATTGCTCTCGGAGAAACTCAAGTGATTTCAGATACAAAAAAGGCTTTTACAAATGCTGGAGTGAATGTGGAGTTGTTGGAGGCACTTGCCAACGGAAAAGTTGACGGCTTAAAAAGAAGCAATCATGTACTTTTAGTGAAGAACCTGCCATACGGTTCAACGGAAAATGAACTGTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACGAAGACATTGGCTCTGGTTGTTTTCCTTGAAGCAGCAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCATTTGACATTCTTAGCCAAAGTACAACATCTAGAAATAATGAACTGAATACAGCCGTTGGTGAAAATGATGCCAAGCGGGTGATGTTGGAGCAACATGTGCAAAAAATATCAGAGGATATTGATCCTGACAGAGTGGAGGGTAGGTCCTTGTTTGTCAAGAATCTCAATTTCAAAACAACAGACGAGAGTTTGAAGAAACATTTTATTGAACACGTGAAAGAGGGAAAAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAACGGGAAAAATGTTTC 2000 0.401 MSRICVKNIPKYATEDRLREFFSEKGEITDVKLMRTKDGKSRQFAFIGFRSEHEAQEAIQYFNRSYLDTCRITCEEARKRGDADLPRPWSRHSASKESKVTSDVKEHARPKEQGQVHNSEDIDDPELQEFLQVMQPRAKSKLWANDTSNVSTIDEKQKVSKKGSKDTSVANPADSDHSDSSSDQPSNHEDDKSCETKGNEIISDMDYFKSRVTKDWSDSESDDKEDDGDNDSVSTVDNDQENDANPSEGEENVDKKSSKISQTNGAKELNLKGQPDATGEDIAQKKSQVNSDVQGSQFLNSDDKKEVFESCRLFVRNLPYTTTEEELEEHFSKIGSVSQVHLVVDKSTKRSKGIAYILYAFPEFAARALEELDNSIFQGRLLHVMPAIQRPSENKESKDQGVKTLKQKREEEKKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVISDTKKAFTNAGVNVELLEALANGKVDGLKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEAAEARAAFRGLAYKRYKDAPLYLEWAPFDILSQSTTSRNNELNTAVGENDAKRVMLEQHVQKISEDIDPDRVEGRSLFVKNLNFKTTDESLKKHFIEHVKEGKILSVKVKKHLKNGKNVS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61341g00001 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 575 IPR000504 GO:0003723
Stsc61341g00001 667 SUPERFAMILY RNA-binding domain, RBD 615 665 IPR035979 GO:0003676
Stsc61341g00001 667 SUPERFAMILY RNA-binding domain, RBD 305 392 IPR035979 GO:0003676
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 145 296 - -
Stsc61341g00001 667 SUPERFAMILY RNA-binding domain, RBD 500 587 IPR035979 GO:0003676
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 82 123 - -
Stsc61341g00001 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Stsc61341g00001 667 FunFam Multiple RNA-binding domain-containing protein 1 494 596 - -
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 220 236 - -
Stsc61341g00001 667 CDD RRM4_RBM19_RRM3_MRD1 503 574 - -
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 164 180 - -
Stsc61341g00001 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Stsc61341g00001 667 Gene3D - 1 120 IPR012677 -
Stsc61341g00001 667 SMART rrm2_1 3 75 IPR003954 GO:0003676
Stsc61341g00001 667 SMART rrm2_1 312 385 IPR003954 GO:0003676
Stsc61341g00001 667 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Stsc61341g00001 667 Gene3D - 497 599 IPR012677 -
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 181 219 - -
Stsc61341g00001 667 SMART rrm1_1 504 571 IPR000504 GO:0003723
Stsc61341g00001 667 SMART rrm1_1 312 385 IPR000504 GO:0003723
Stsc61341g00001 667 SMART rrm1_1 3 75 IPR000504 GO:0003723
Stsc61341g00001 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 622 667 IPR000504 GO:0003723
Stsc61341g00001 667 CDD RRM1_MRD1 2 77 - -
Stsc61341g00001 667 Gene3D - 209 401 IPR012677 -
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 392 418 - -
Stsc61341g00001 667 PANTHER RNA-BINDING MOTIF PROTEIN 14B 2 455 - -
Stsc61341g00001 667 FunFam RNA-binding motif protein 19 1 100 - -
Stsc61341g00001 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 566 IPR000504 GO:0003723
Stsc61341g00001 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Stsc61341g00001 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 383 IPR000504 GO:0003723
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 281 296 - -
Stsc61341g00001 667 MobiDBLite consensus disorder prediction 388 418 - -
Stsc61341g00001 667 Gene3D - 618 666 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61341g00001 Stsc-Chr61341 1 8442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61341g00001 2 82 Eukaryotic Initiation Factors Gene Family AT1G49760 35.802 1.34e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61341g00001 K14787 - gmx:100798742 870.537