Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61329g00001 ATGACGACGGAGCCACCACCACCAATGCCACTTCCCGGCGAAGAAGCCGCCACGTCACCCGCTTTTGACTTAGAAACCGCACCTCAACCACCCGCCCCGCCCCGTAAAAAGAAGCGAAACCTTCCTGGAATGCCTGATCCGGAAGCTGAGGTGGTTGCTTTGTCGCCGAAGACACTGTTAGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGAGGGACCAGAACCTCCAGCTCCACCGGCGGGGACACAACCTCCCGTGGAAGCTCCGGCAGCGTGCCACCAAGGAGGTGCGGAAGAAGGTGTACGTGTGCCCCGAACCTTCTTGTGTCCACCACAACCCTTCCAGGGCGCTCGGCGACCTCACCGGCATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGCTCAAATGCGAACGTTGTTCAAAGAAATACGCCGTTCAATCCGATTGGAAGGCACACATGAAGACCTGCGGAACCAGAGAGTACAGATGCGGTTGCGGCACCTTGTTCTCTAGGAGGGATAGCTTTGTTACGCATAGAGCTTTTTGCGATGCGTTAGCTGAAGAGAGTGCTAAGGCTCAAACCCTAAGCAATGATGACAAGGACGGTGGTGCTGGTGTGGCGGTGGCTTCTTCTTCGTCACCTCCGCAGCCGCCGCTTACTCCGTCGACTTCGGTGGTGTCTCCGACTCTGTCGATTCAGAGCTCAGAAATTCTGGAAAATGCGACGAGGGTGTCACCGCCAGCTTCGAACGCAGCAACGTGTGTTGCGAACGCTGTTACAACTAGCACTGTTTTTGCAACTGTTTTGGCATCCTCAGCCGGAGCAGCACCACCATCAACTACCTCATTCCCCAGCCTCACCACAGCCACATCACTCTCCCTCTCCGTACCACACTATCTCTCCAACAGCGTTAATAACGACCCACGCCATCACTACACTGCATGTCCACAGCCACCACCAACAGCTGCACTGTCAGCCACCGCATTGCTCCAAAAGGCAGCTCAAATGGGTGCAGCTTCGTCCAACACATCGCTGCTACGAGGTTTAGGCTTAGCCACGTCATCTCCTACGGGGCATCATCATCATCAAGATGAGAGAGGAATTGAAAACCCAACAACAATGCAATGGAACATGAGCAGCCATGTGAAGCAAGAGAATCCGAGTTTGGCAGATCATAACCTCGGGCTTGGACTTCCATGTGGGAATACGGGTTTTGCTGATGTGATGATGGGGTCCCCTCCCATGACCCGTGATCTTCTTGGTCTTGGGATAGGTGGCAATGGTGGTGATAATGTTAGCAGGGGTGGTCTTTCTGCTTTGTTAAACTCTTTTGGAGGGAACTTTGATTCATCTGGGGATAATGCAGGTGGAGTTCGCCACCAGTAG 1407 0.5402 MTTEPPPPMPLPGEEAATSPAFDLETAPQPPAPPRKKKRNLPGMPDPEAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRATKEVRKKVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKLKCERCSKKYAVQSDWKAHMKTCGTREYRCGCGTLFSRRDSFVTHRAFCDALAEESAKAQTLSNDDKDGGAGVAVASSSSPPQPPLTPSTSVVSPTLSIQSSEILENATRVSPPASNAATCVANAVTTSTVFATVLASSAGAAPPSTTSFPSLTTATSLSLSVPHYLSNSVNNDPRHHYTACPQPPPTAALSATALLQKAAQMGAASSNTSLLRGLGLATSSPTGHHHHQDERGIENPTTMQWNMSSHVKQENPSLADHNLGLGLPCGNTGFADVMMGSPPMTRDLLGLGIGGNGGDNVSRGGLSALLNSFGGNFDSSGDNAGGVRHQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61329g00001 468 Gene3D Classic Zinc Finger 44 112 - -
Stsc61329g00001 468 FunFam protein indeterminate-domain 12-like 44 112 - -
Stsc61329g00001 468 Gene3D Classic Zinc Finger 120 200 - -
Stsc61329g00001 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Stsc61329g00001 468 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Stsc61329g00001 468 MobiDBLite consensus disorder prediction 1 48 - -
Stsc61329g00001 468 MobiDBLite consensus disorder prediction 200 233 - -
Stsc61329g00001 468 Pfam Zinc-finger of C2H2 type 65 87 - -
Stsc61329g00001 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 437 IPR031140 -
Stsc61329g00001 468 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Stsc61329g00001 468 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Stsc61329g00001 468 SMART c2h2final6 106 136 IPR013087 -
Stsc61329g00001 468 SMART c2h2final6 65 87 IPR013087 -
Stsc61329g00001 468 SMART c2h2final6 141 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61329g00001 Stsc-Chr61329 866 4609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61329g00001 36 430 IDZ Gene Family AT5G66730 51.770 2.28e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc61329g00001 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61329g00001 K25869 - qsa:O6P43_018833 483.411