Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61326g00006 ATGGGGGGTTCATCAGAGAAGTTCCTTCAAGACTTGCTATTATACGCTGCAAGCGCTGCTATGAGTTGCCTCGTCCTCTTCGTTGGGTTACGACAACTTGACCCAACACGTGAAACTTCCAAGAAGGCTCTCGAACACAAGAAGGAGATTGCCAAGCGTCTTGGTCGACCCCTTGTTCAGACAAACCCTTACGAGGATGTTATAGCAAGTGATGTTATAAATCCTGACCACATCGATGTGGAGTTTGATTCGATTGGGGGATTGGAAACAATCAAGCAAGCTCTGTTTGAGCTTGTTATACTGCCTCTAAAAAGACCCGACTTGTTTTCGTATGGTAAGCTTCTTGGACCTCAAAAGGGTGTCCTGTTGTATGGACCTCCAGGCACCGGAAAAACCATGCTTGCCAAAGCAATTGCTAAGGAGTCAGGAGCTGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTCGGTGATGCCCAAAAGCTTGTGACTGCTGTATTTACCCTTGCTAATAAGCTCCAGCCTGCCATCATATTCATTGACGAGGTTGACAGTTTTTTGGGTCAACGTCGTACATCAGATCACGAGGCTTTGTTAAACATGAAAACTGAGTTTATGGCTCTGTGGGATGGGTTTACCACAGATCATAATGCTCGAGTTATGGTCCTTGCAGCTACCAATCGTCCTTCTGAACTTGATGAGGCGATACTTCGGCGCCTTCCTCAAGCTTTTGAAATTGGGATTCCAGACCAGAGGGAGAGAGCTGCGATATTGAAGGTTATCTTGAGGGGAGAGAGGGTTGAGGAAAACATAGACTATGATTATGTAGCTAGCTTATGTGAGGGTTATACCGGGTCAGATCTGTTTGACCTTTGCAAGAAGGCTGCTTATTTTCCTATTCGTGAACTGCTGGACGAAGAGAAGAAAGGAAAATGTTCTTCTGAACCAAGGCCTTTGTCGCAGAAAGATTTGGTGAAGGTCCTTGGTACTTCACAGAAGACAAATGCTGCTGCAAGTGCATACAGTGGATTGTCATCATCAAATAGGTGGACACCAGTTGAGTCAGGTGATTATCAACTTCAAGCTGCAATCAATGAAATTTCTAAGCTTGTGGTTTCTCACATGATTAACCTCCATGCCCAGGATCAGTAA 1161 0.447 MGGSSEKFLQDLLLYAASAAMSCLVLFVGLRQLDPTRETSKKALEHKKEIAKRLGRPLVQTNPYEDVIASDVINPDHIDVEFDSIGGLETIKQALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVTAVFTLANKLQPAIIFIDEVDSFLGQRRTSDHEALLNMKTEFMALWDGFTTDHNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAAILKVILRGERVEENIDYDYVASLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKCSSEPRPLSQKDLVKVLGTSQKTNAAASAYSGLSSSNRWTPVESGDYQLQAAINEISKLVVSHMINLHAQDQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61326g00006 386 FunFam ATPase family AAA domain-containing protein 1 79 256 - -
Stsc61326g00006 386 ProSitePatterns AAA-protein family signature. 223 242 IPR003960 GO:0005524|GO:0016887
Stsc61326g00006 386 Gene3D - 252 332 - -
Stsc61326g00006 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 331 IPR027417 -
Stsc61326g00006 386 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 342 - -
Stsc61326g00006 386 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Stsc61326g00006 386 CDD RecA-like_ATAD1 84 249 - -
Stsc61326g00006 386 Gene3D - 79 336 IPR027417 -
Stsc61326g00006 386 Pfam AAA+ lid domain 273 309 IPR041569 -
Stsc61326g00006 386 Pfam ATPase family associated with various cellular activities (AAA) 121 250 IPR003959 GO:0005524|GO:0016887
Stsc61326g00006 386 SMART AAA_5 117 253 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61326g00006 Stsc-Chr61326 16932 20982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61326g00006 80 311 Calmodulin-binding Proteins AT3G56690 35.294 3.89e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61326g00006 K22530 - gmx:100796908 648.662