Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61321g00004 ATGGGTGGTGGTGGTACGCTCGTTGAAGGGATTCGACGCTTATTCCAAAGACGTGCTTCTTCGGCCATTAACATTAATAAGGGCCAGGGGGACGAAAATAATAAGAATGATGATGTGTTGTTGGTGAGAGATTTGCGGGCACAATTGGCCTCTATTCCCACTTGCAATCAAGAAACTGAACTCGCCATTGACGATGACTTTGATATCTCTGGATTGAAGCCCCTCAAAGTACCTACCCAGATCTTGTTCAAATACTCTTCCATGGATCCCCACAAAAAGGGTTCGGGTTCTCCAGAAGCTGAGTTTTTCACCGAGTATGGAGAGGCTAGCAGATACCAAATCCAGCAAGTGATCGGGAAAGGAAGTTATGGCGTGGTGGGGTCTGCCTTTGACACTCATAGTGGGGAAAGGGTTGCAATCAAGAAGATCAACGATGTTTTTGAACATGTATCGGATGCTACACGGATCCTAAGAGAAATCAAGCTCCTGCGCTTGCTTCGCCATCCTGATATTGTAGAAATTAAACATATCATGCTTCCTCCTTCCCGTCGAGAGTTCAAGGATATCTACGTTGTGTTTGAGTTGATGGAATCTGATCTTCATCAAGTGATTAAGGCCAACGATGATCTTACTCCTGAGCATCACCAATTTTTCTTGTACCAACTTCTTCGAGGCCTCAAGTATATACACACAGCAAATGTTTTTCATCGTGACTTAAAACCCAAAAACATCCTTGCCAATGCTGATTGCAAACTCAAGATATGTGATTTTGGACTTGCTCGAGTTTCTTTTAATGACGCTCCATCAGCTATATTCTGGACTGACTATGTTGCAACTCGCTGGTACCGGGCACCTGAGCTATGTGGTTCTTTTTTCTCTAAATATACCCCGGCTATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGAAAGCCATTATTTCCGGGTAAAAATGTGGTGCATCAATTGGATCTCATGACTGATTTGCTTGGCACTCCTCCGCGTGACTCCATTGCAAGGATTCGAAATGAGAAAGCTAGAAGATATCTTAGTGGCATGAGAAAGAAGCAACCAGTTCCATTATCTAAAAAATTTCCCTCTTCGGATCCATTGGCTCTTCGTTTACTGGAGCGCTTACTTGCATTTGATCCTAAAGATCGTCCGACAGCTGAAGAGGCTTTAGCTGATCCTTATTTCCGAGGCTTGTCCAATGTGGATCGGGAGCCATCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGATTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAGATGCTCCAGGAATATCTTCTTGGAGGAGAACAAACCAGCTTCATGTATCCAAGTGGGGTTGATCGCTTCAAGCGACAGTTTGCACATCTTGAGGAACATTATGGCAAATGTGAGCGAAGCACTCCGTTGCAGAGACAGCATGCCTCCTTACCTAGAGAGCGAGTTTGTGTTCGGAAGGATGAAAATAAAAATGATGAAAGGCCCGATGGATCAAATTTCTCTGGTCCTCGAGGGTCTGATGCCACCACAGGTGCGGTAAACACAAATGCACAAAATGGACCCTCAAAGCCAAACAACAGCACGCGTTGCCTCTTGAAAAGTGCTAGCATCAGTGGTTCAAAGAGTTATGAGAAACCAAGTAAAGACCCAGAGGAGGAACCAATCGCGGAGGTCAATGAGGAAACAGCAGATGGAGTGACAGAGAAAGTTTCTGCTTTAAATGTTTAG 1794 0.4404 MGGGGTLVEGIRRLFQRRASSAININKGQGDENNKNDDVLLVRDLRAQLASIPTCNQETELAIDDDFDISGLKPLKVPTQILFKYSSMDPHKKGSGSPEAEFFTEYGEASRYQIQQVIGKGSYGVVGSAFDTHSGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPRDSIARIRNEKARRYLSGMRKKQPVPLSKKFPSSDPLALRLLERLLAFDPKDRPTAEEALADPYFRGLSNVDREPSTQPISKLEFEFERRKLTKDDVRDLIYREILEYHPQMLQEYLLGGEQTSFMYPSGVDRFKRQFAHLEEHYGKCERSTPLQRQHASLPRERVCVRKDENKNDERPDGSNFSGPRGSDATTGAVNTNAQNGPSKPNNSTRCLLKSASISGSKSYEKPSKDPEEEPIAEVNEETADGVTEKVSALNV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61321g00004 597 MobiDBLite consensus disorder prediction 524 565 - -
Stsc61321g00004 597 ProSitePatterns MAP kinase signature. 147 250 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc61321g00004 597 MobiDBLite consensus disorder prediction 486 597 - -
Stsc61321g00004 597 ProSiteProfiles Protein kinase domain profile. 112 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61321g00004 597 Gene3D Phosphorylase Kinase; domain 1 128 449 - -
Stsc61321g00004 597 FunFam Mitogen-activated protein kinase 427 449 - -
Stsc61321g00004 597 ProSitePatterns Protein kinases ATP-binding region signature. 118 142 IPR017441 GO:0005524
Stsc61321g00004 597 SMART serkin_6 112 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61321g00004 597 SUPERFAMILY Protein kinase-like (PK-like) 108 408 IPR011009 -
Stsc61321g00004 597 Pfam Protein kinase domain 112 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61321g00004 597 Gene3D Transferase(Phosphotransferase) domain 1 198 426 - -
Stsc61321g00004 597 MobiDBLite consensus disorder prediction 500 519 - -
Stsc61321g00004 597 FunFam Mitogen-activated protein kinase 101 206 - -
Stsc61321g00004 597 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 111 453 - -
Stsc61321g00004 597 FunFam Mitogen-activated protein kinase 198 426 - -
Stsc61321g00004 597 CDD STKc_TDY_MAPK 111 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61321g00004 Stsc-Chr61321 5509 9468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61321g00004 1 596 MAP Kinase Gene Family AT1G73670 68.534 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc61321g00004 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61321g00004 - - gmx:100780831 945.651