Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61318g00006 ATGCCGAAAGCATACAAGGCATTCCAAGCATTAGTCCAAGTTGTGACTCCAAAGTCGTTTTCCTGCCGAAAAGATAGAGAGTATGTCTCAAAAATTGGCTTTAATAGAGGATATCCTGAGCAAGAATATCAAGATTTTTCATCGGCTTGCCCATGGATTAGTGTAGTTCTAGTTAGTAGCAGTGGTGGGAAATCAAAACCCTTGCTTTTTGGGCTGGATGAGATTGGCAGACTGCAAGCAAATGGCGGGATAATCTATAGCAACTGTAGCAGTTTCTCATTTTACTCAAATTTGGATGATCAAGTTACCACACATTTAATCCTTGCAACTAAACAAGATTTGCTTTTTATTGTTGACATTTCTGATATATTTAATGGTGAGTTAGATACAAAGTATGGGAAGTTCACCCATATCAACAGCAGAAAAAGACAAGAAAGTGAGATCTACATAAATATATGGGAGAGAGGTGCTAAAATTGTTGGAGTCCTTCATGGGGATGAAGTTGCCATTATACTGCAAACTACTCGGGGAAACCTAGAGATAGATTTCAATATTATTGTAGATTACTGTGCTTGGCAGGCATTTTCACTATTGGCCTCTGAATTTGTTAGACAGGTTCCCAATGTTATGCTAGTTGGAGATATCACTAGTAACAAGATTTCATCTGTTCTGATGGCTTATAAGGAAAGCACTTCAGGAAAGTATTGGTCAGATAAGAACAAAAGAAATGGAAAATCTAATCTTGTACTACTTGTAAGGCTCTTGATCAATGTGGCCCCGAACAAGGATACGAGGTTGGTTGGGAGCACTTCAACTCCTTCTCATTTCCTAAGCCCTCTTAGCTGGGTTTCCTTGGAAAATTGTCCAAGTGAAAGTCTTCGTTCACATTTTAGCTGCAAGATGCTGGGAACTAGTAAGAGAGAGAGAGTGAACCAAGAGATTGCAAAACAACATAAGCTAGGAAGGAAGGGTCTTTCTCCTTTACAGCCTCCCAAAAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCCATAGTGCAGGCTATTGAGGCACTAGATAGAAGTCGAGTCTGTAGTGAATATTGGGATTCTCGACCATACTCCCGGCCTCAAGGGCAGATTTCACAACCTCGTCTAACCAAGTCAAATGGAGGAAATGGTCAAGGGGTTCTTGTGAATCAGCACTTGCCCAATGGTGGTGTTGTAGCATTACAAAGCTTATTTAGAAAGGCTAATGCTGAAGAATTGAACTCACTGTACAACATTTTGAGTGATAAGCCAGAGGCTGATCGGAACCTAATTGCACGTCTTCTAAATGAAGAGATTCACAAATCACAACCGTCTTAG 1353 0.4043 MPKAYKAFQALVQVVTPKSFSCRKDREYVSKIGFNRGYPEQEYQDFSSACPWISVVLVSSSGGKSKPLLFGLDEIGRLQANGGIIYSNCSSFSFYSNLDDQVTTHLILATKQDLLFIVDISDIFNGELDTKYGKFTHINSRKRQESEIYINIWERGAKIVGVLHGDEVAIILQTTRGNLEIDFNIIVDYCAWQAFSLLASEFVRQVPNVMLVGDITSNKISSVLMAYKESTSGKYWSDKNKRNGKSNLVLLVRLLINVAPNKDTRLVGSTSTPSHFLSPLSWVSLENCPSESLRSHFSCKMLGTSKRERVNQEIAKQHKLGRKGLSPLQPPKSLDGFEMFGFSSPAIVQAIEALDRSRVCSEYWDSRPYSRPQGQISQPRLTKSNGGNGQGVLVNQHLPNGGVVALQSLFRKANAEELNSLYNILSDKPEADRNLIARLLNEEIHKSQPS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61318g00006 450 SMART fyrc_3 280 375 IPR003889 GO:0005634
Stsc61318g00006 450 Pfam IKI3 family 40 180 IPR006849 GO:0002098|GO:0033588
Stsc61318g00006 450 MobiDBLite consensus disorder prediction 368 390 - -
Stsc61318g00006 450 Pfam F/Y rich C-terminus 283 363 IPR003889 GO:0005634
Stsc61318g00006 450 Gene3D - 252 361 - -
Stsc61318g00006 450 ProSiteProfiles FYR domain FYRC motif profile. 276 367 IPR003889 GO:0005634
Stsc61318g00006 450 PANTHER ELONGATOR COMPLEX PROTEIN 1 181 238 IPR006849 GO:0002098|GO:0033588
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61318g00006 278 445 JUMONJI Transcription Factor Family AT1G08620 50.286 1.12e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61318g00006 K11373 - gmx:100526992 261.151