Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61317g00003 ATGGGTTGGCTTAGCAAATTTTTTAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCATATTATAATGGGGATGCAGATTCTTACTTGCCGTCGACCTCTGGTGTGACAAACGATGTTTGGCCCGAGAATGAAAATGAAGATATCGATCGTGCCATTGCATTATCTCTGGCAGAGCAAAATCAAAATCATAAAGGACACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCAAGAGCCATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCCAAATATGGAAACGAAAATATGTATCAACCCCATCCGGCGATGCCAATTCCAGTACCAGTGTATTACCCGATGGGATCAAGGATTTGTGCCGGCTGTCATACTGAGATTGGTTATGGGCGATACCTAAATTGCTTGAATGCTTTTTGGCATCCTGAATGCTTCCGCTGCCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTACAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTACAGAAATATTGCCCTTCTCATGAACATGATAACACTCCGAGATGTTGCAGCTGTGAGCGAATGGAGCCACGGGAGACTGGATATATCGGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCTTAGACTCTGCTATCATGGATACAAGCGAATGCCAACCCCTTTATACCGATATACAAAGATTTTATGAAAGCTTAAACATGAAACTGGAGCAGCAAATTCCACTGCTCTTGGTTGAAAGACAAGCCCTGAATGAAGCAAGAGAGGGGGAGAAGCATGGCCATTATCACATGCCGGAGACGAGAGGACTCTGCCTTTCGGAAGAGCAGACTATCAGCACCGTCTCGAGACGACCGAGACTTGGGGCAGGAAACAGAGCAGTAGACATGAGAACACAATCATACAAATTGACGAGACGCTGCGATGTGACCGCAATTCTCATTTTATTTGGACTTCCAAGATTGCTTACTGGGTCGATCCTAGCTCACGAGATGATGCATGCATGGCTGCGGCTTAAAGGCTACCGAACCCTAAGTCAAGATGTCGAAGAAGGTATATGTCAGGTTATGGCGTACATGTGGTTGCAATCTGAGCTCGCTTCAGCGTCAGCCTCATCCTCATCTTCGACATCTAGAAAAGGGAAAAGACCCCCTTTTGAGATGAAGCTTGGCGAGTTCTTCAAGCACCAGATTGAATCCGACATCTCGCCGGTATACGGAGACGGGTTTCGGGCAGGCCAACAAGCAGTGCAAAAGTATGGTCTTCAGAAGACCCTAAACCATATATGGATGACTGGTACTTTCCCATTTTGA 1446 0.453 MGWLSKFFKGSDQKISEGHYHSYYNGDADSYLPSTSGVTNDVWPENENEDIDRAIALSLAEQNQNHKGHHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMYQPHPAMPIPVPVYYPMGSRICAGCHTEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYTDIQRFYESLNMKLEQQIPLLLVERQALNEAREGEKHGHYHMPETRGLCLSEEQTISTVSRRPRLGAGNRAVDMRTQSYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVMAYMWLQSELASASASSSSSTSRKGKRPPFEMKLGEFFKHQIESDISPVYGDGFRAGQQAVQKYGLQKTLNHIWMTGTFPF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61317g00003 481 SMART lim_4 126 178 IPR001781 -
Stsc61317g00003 481 SMART uim 46 65 IPR003903 -
Stsc61317g00003 481 SMART uim 79 98 IPR003903 -
Stsc61317g00003 481 Pfam Ubiquitin interaction motif 79 92 IPR003903 -
Stsc61317g00003 481 Pfam Ubiquitin interaction motif 47 62 IPR003903 -
Stsc61317g00003 481 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 208 - -
Stsc61317g00003 481 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Stsc61317g00003 481 Coils Coil 71 91 - -
Stsc61317g00003 481 ProSitePatterns LIM zinc-binding domain signature. 127 161 IPR001781 -
Stsc61317g00003 481 PANTHER PROTEIN DA1-RELATED 2 3 480 IPR045218 -
Stsc61317g00003 481 Pfam Protein DA1 277 475 IPR022087 -
Stsc61317g00003 481 CDD LIM_DA1 127 179 - -
Stsc61317g00003 481 Gene3D Cysteine Rich Protein 122 186 - -
Stsc61317g00003 481 CDD LIM 154 229 - -
Stsc61317g00003 481 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 119 152 - -
Stsc61317g00003 481 ProSiteProfiles LIM domain profile. 125 185 IPR001781 -
Stsc61317g00003 481 FunFam Protein DA1-related 1 121 180 - -
Stsc61317g00003 481 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 79 98 IPR003903 -
Stsc61317g00003 481 Pfam LIM domain 127 181 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61317g00003 Stsc-Chr61317 12005 16979 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc61317g00003 DA1-like 7.3e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61317g00003 - - qsa:O6P43_016130 808.135