Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61315g00003 ATGACACCACCCCTCTCACGTGACCACCTTCCGTTACTCTTTTCCGTTATTCTCACCTTCTTCCTTATCTTCACCGTCGCCAAATCCCAGCAACTTCACGATCAAGAACACCAACTCCTCCTGAGGATAAAACAGTACTTTCACAACCCACCTTCACTCTCTCACTGGACCCCTTCTTCCTCTCACTGTTCTTGGCCTGAACTCACCTGCAACCGCCGCGGTTCCGTCACCGGAATAACCCTTTCCAACGCCAACCTCAACCAAACAATACCTTCTTTCTTATGCGACCTCAACAACCTCACACGTGTCGATTTCAGCCAGAACTTCATTCCCGGCGAGTTTCCGATAACTCTCTACAAATGCTCTCAACTTCAGTATCTTGATTTGTACATGAACAACTTCGTCGGTCAAATTCCCGGTGACATTAACAGGCTGTCAAATTTGCAGTACCTGAATCTCGCTTCGACGAACTTCGCCGGCGACGTTCCGGCCGCGCTCGGAAAATTGAAGGAGCTCAGAGTTCTTCGCCTTCAGTACTGTCTTTTAAACGGAACTTTGCCTGATGAGATTGGAGAATTGTCCAATCTTGAATTCTTGGATTTGTCAACGAACACCATGCTTCCTCCTACAAGATTGCCATCAAGCTGGACCGGGTTGAAGAAACTCAAGACTTTTTATGCGTTTGCGTGTAACCTGGTTGGTGAAATTCCTGAAAGAATTGGAGATATGGTGGCTATGGAGGAGATTGATTTGTCAAAGAACAAGTTAACTGGACAAATTCCAAGCGGTTTGTTCATGCTCAAGAATCTGAGCATTGTGTACCTTTGGCAAAACAAGCTCTCTGGAATGATACCTGATTCGGTTGAAGCATCAAACTTGACCATCATTGATCTAACAAATAATAGCCTTACAGGGAAGATACCAGACGATTTCGGAAAGCTTGAAAACTTAAGTTACTTGAAATTGTCTATGAATAGCTTGTCAGGGGAGCTGCCTCAAAGCTTAGGCCGGCTTTCGTCGCTGATCGATTTTCGTGTCTTCAGCAACAAGTTATCAGGTACTCTTCCCCCTGACTTCGGCCGCTACTCGAAGCTTCAAATATTTCATGTTGGAGACAATGATTTTACTGGAAAGCTGCCAGAGAGCTTGTGTTATGATGGTGTGTTGCAAAATTTAACTGTCTATGAAAATAATCTGAATGGGGAGTTACCAGAATCACTAGGAAATTGTAGAGCCCTGCTGGACCTGAAAATTCAGAAGAATGGATTTTCTGGTATCATTCCTAGTGGCCTATGGACATCTTTCAATTTGTCAAATTTCATTGTAGCTCATAATAAGTTTAGTGGTGAGCTTCCTGAAAGATTGTCTGCGAATATTTCGCGGTTTGATATCAGTGACAATCAGTTTTCTGGTAGAATTCCAGCTGCAGTGTCTTCCTGGACCAATGTGGAATACTTTGATGCCAGCAAGAACAACCTTTCTGGAAGTATTCCACCTGGGATTACTGCTCTTCCAAAGCTACTATCCCTCAATCTTCATCAGAACCAGCTCACCGGGCCACTTCCATCAGATATATTTTCATGGAAGTCCCTAGAAATTCTAGTTTTGAGCCAGAACAAACTCTCAGGACAAATTCCAGTCATGATTGGCCGGTTGCCTGCTCTTAATGTGCTTGACCTTTCAGAAAATCAATTCTCTGGCCAAATTCCTTCTCTACCTTCGACACTGAGCAATTTCAATCTGTCATCCAATCGCTTGACAGGGAGGGTTCCGAGCGAATTCGAAAATCCTGCATATGCTACCTGCTTTTTGGACAACCCTGGCCTCTGTGCTGTTACTCTAGTACTTAACCTTGCATTGTGTAATTCTGGTCCTCAAAGGCCAAACAAAGGCTCATCTTGGTCTCTTGGGTTGATTACCTGCCTGGTGGTTATAGCTTTCTTGCTGGCTTCATTAGCTGCATTCTTGATTTCCAGATTTTACAGCAAAAGAAACCGAGGACTGGACAACTCATGGAAGCTCATTTCCTTTCAAAGGCTAAGTTTCAGAGAATCAAGCATAGTATCATCCTTGACAGAGAATAATATCATTGGCAGCGGTGGATACGGTACAGTTTACCGTGTGCCTGTTGATGGATTAGGCTATGTTGCAGTGAAGAAGATTTGGAATAACAGAAAGTTAAACCACAGGCTTGAGAGCTCATTTCGTGCAGAAGTCAAGATATTGAGCAATATTCGTCATGGCAACATTGTGAAGTTGTTGTGCTGTATCTTCAATGAAGATTCCATGCTCCTTGTCTATGAGTACCTAGAGAATCATAGCCTAGACAAGTGGCTGCAAAAGAAGAGCAAGTCGGCATCCATGTCTGGTAAAGTCAATCACTTTCTCCTTGATTGGCCAAAGAGATTGCAAATAGCCATTGGTGTTGCCCAGGGTCTAACATATATGCACCATGATTGCGCGCCGCCTGTGGTTCATAGAGACATCAAAACAACCAACATACTTTTGGATTCTCAATTCAATGCAAAAGTAGCAGATTTTGGTCTTGCAAGGACGCTGATCAAGCCCCATGCCACCATGACAAGTGTTGTTGGCTCATTTGGATATATTGCTCCAGAGTATGTTCAAACAACGAAAGTGAGCGAAAAGGTTGATGTCTTCAGCTTTGGGGTTATACTATTGGAATTAACTACTGGAAAAGAAGCTAATTATGGAGATGAGCACTCATCTCTTGCAGAGTGGGCATGGCGCCATGTTCAGATAGGAACCAACATAGAAGAACTGCTGGACACTGATGTCATGGAGGCTAGTTACACTGATGAAATGTGCAGTGTTTTCAAACTTGGGGTCATATGTACTTCCCCATTGCCTGCTGGTAGGCCTCAAATGAAGGAGGTTCTGCAACTGTTGTATCGATTCGGCGAAGGATTCGCATTTAGAGAGATGAATATTGGGAAATATGAGATTATTCCCCTTCTTAAGAATTCAAAAATGGAAATGAGGCTGGATATTGACAATGATAGTGACTAA 3030 0.4343 MTPPLSRDHLPLLFSVILTFFLIFTVAKSQQLHDQEHQLLLRIKQYFHNPPSLSHWTPSSSHCSWPELTCNRRGSVTGITLSNANLNQTIPSFLCDLNNLTRVDFSQNFIPGEFPITLYKCSQLQYLDLYMNNFVGQIPGDINRLSNLQYLNLASTNFAGDVPAALGKLKELRVLRLQYCLLNGTLPDEIGELSNLEFLDLSTNTMLPPTRLPSSWTGLKKLKTFYAFACNLVGEIPERIGDMVAMEEIDLSKNKLTGQIPSGLFMLKNLSIVYLWQNKLSGMIPDSVEASNLTIIDLTNNSLTGKIPDDFGKLENLSYLKLSMNSLSGELPQSLGRLSSLIDFRVFSNKLSGTLPPDFGRYSKLQIFHVGDNDFTGKLPESLCYDGVLQNLTVYENNLNGELPESLGNCRALLDLKIQKNGFSGIIPSGLWTSFNLSNFIVAHNKFSGELPERLSANISRFDISDNQFSGRIPAAVSSWTNVEYFDASKNNLSGSIPPGITALPKLLSLNLHQNQLTGPLPSDIFSWKSLEILVLSQNKLSGQIPVMIGRLPALNVLDLSENQFSGQIPSLPSTLSNFNLSSNRLTGRVPSEFENPAYATCFLDNPGLCAVTLVLNLALCNSGPQRPNKGSSWSLGLITCLVVIAFLLASLAAFLISRFYSKRNRGLDNSWKLISFQRLSFRESSIVSSLTENNIIGSGGYGTVYRVPVDGLGYVAVKKIWNNRKLNHRLESSFRAEVKILSNIRHGNIVKLLCCIFNEDSMLLVYEYLENHSLDKWLQKKSKSASMSGKVNHFLLDWPKRLQIAIGVAQGLTYMHHDCAPPVVHRDIKTTNILLDSQFNAKVADFGLARTLIKPHATMTSVVGSFGYIAPEYVQTTKVSEKVDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHVQIGTNIEELLDTDVMEASYTDEMCSVFKLGVICTSPLPAGRPQMKEVLQLLYRFGEGFAFREMNIGKYEIIPLLKNSKMEMRLDIDNDSD 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61315g00003 1009 SUPERFAMILY RNI-like 291 594 - -
Stsc61315g00003 1009 Gene3D Ribonuclease Inhibitor 211 386 IPR032675 -
Stsc61315g00003 1009 Gene3D Ribonuclease Inhibitor 387 625 IPR032675 -
Stsc61315g00003 1009 SMART serkin_6 691 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61315g00003 1009 SMART LRR_typ_2 552 579 IPR003591 -
Stsc61315g00003 1009 SMART LRR_typ_2 504 528 IPR003591 -
Stsc61315g00003 1009 SMART LRR_typ_2 169 193 IPR003591 -
Stsc61315g00003 1009 SMART LRR_typ_2 243 267 IPR003591 -
Stsc61315g00003 1009 SMART LRR_typ_2 314 338 IPR003591 -
Stsc61315g00003 1009 FunFam Receptor-like protein kinase HSL1 671 769 - -
Stsc61315g00003 1009 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Stsc61315g00003 1009 ProSiteProfiles Protein kinase domain profile. 691 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61315g00003 1009 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Stsc61315g00003 1009 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Stsc61315g00003 1009 Gene3D Transferase(Phosphotransferase) domain 1 770 979 - -
Stsc61315g00003 1009 SUPERFAMILY Protein kinase-like (PK-like) 686 971 IPR011009 -
Stsc61315g00003 1009 Pfam Leucine rich repeat 269 327 IPR001611 GO:0005515
Stsc61315g00003 1009 FunFam Kinase family with leucine-rich repeat domain-containing protein 770 985 - -
Stsc61315g00003 1009 Gene3D Phosphorylase Kinase; domain 1 679 769 - -
Stsc61315g00003 1009 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 246 970 - -
Stsc61315g00003 1009 SUPERFAMILY L domain-like 40 352 - -
Stsc61315g00003 1009 Gene3D Ribonuclease Inhibitor 33 210 IPR032675 -
Stsc61315g00003 1009 Pfam Protein kinase domain 693 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61315g00003 1009 FunFam Leucine-rich repeat receptor-like protein kinase TDR 311 623 - -
Stsc61315g00003 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Stsc61315g00003 1009 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61315g00003 Stsc-Chr61315 12964 16430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61315g00003 31 974 Receptor kinase-like Gene Family AT5G25930 50.678 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc61315g00003 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61315g00003 - - gmx:100798963 1363.59