Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61312g00002 ATGTTGTTCACATTGCTTCTATGTCACACCCTGCAGGACGAGATTTCAAGCCCGATCAGCGCCCGAATCTTCGAACTCTGCGACGCCGAGCTCTTCCCGGAGGCGGCTCTGCAGACCTCTGAGGTTACCTCAACCAATACAGCAGAAAATATTACAGCCACAGCCACAACCACACCGACAGCCACGGCCACGGCCACTGCGGCCGATACCAATAATAACAACACAACAAACAACTGTAACAACCTTTCAGTTATCTTTGACTCCCAAGAAGAGCTTGACAATGACATCTCTGCCTCCATAGACTTCTCTTCATCTCCCGTGGCGGCGGCTTTCGCGGTTCCTTCTTCTCTTCTTCCAATCACAACTCAGCCGCAACAATTCGACTTCTCAACTGAGAATTCGGTTCTCAAGGGTCTCCCTTACCCTCACCATCATCATCAATTTCCAACTGATGCTAACACTGTTGTAGTTCCACCACCTCTTATGGGGAATCCATTAGTAGTACCTTCTTCTGTTTTTGAAGATGAATGCATGTCTTCAATGGCTTCTTCTTATGTTGCTATGAACACTTGTTCTTCTTCTTCTTCAGCACCTTCTTGCTCTTATCTTAGCCCAGCTGGCATAGGAGTGTTCATGCCTCCTCTTACTACTGCCTTATCTGCTGATTCTGCCTTGTTTGGTGCCAACATTCTACTCGCTTCTGAACTTCAAGCTCAAGAACTTGATTACCAGGGAGAAAATGGTGGAATCTTTTGTGCAGATTCAATTCAGAGGGTCTTCAATCCTCCAGACCTTCAGGCACTTAGTACTGAGAGTCAGCAACTTGTAGCTGGTTCTGGAGGCTCTGCCACTTTAGCACCAGAGATCTCAAACTTGGAGGATTCTACCTTAAAAGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATCCACAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGCCGGAAAACTCTGGCCGATAGCCGGCCCCGAGTTCGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGAGAACCATAGACCAGCTTGTAGCAATCAGGAAGAAGATGACGAAGAAGAAATAGTTGTGAAGGAAGATGAAGATTTGATCGATTCCTCAGATATCTTTGCACATATAAGTGGTGTGAACTCCTTCAAGAAAAATGAAGAAAGGAAGCTTGCAGATCAAGAAACGAAATTAGGAAGCAAAACAGAGCAAGACTCCACGCATATGCGTGGAAGAGCACGCATATGCGTGCTGCTCATACCCCAACCCACGCCTAAACCAACACATATGCGTAGAAGCCCACGCATATGCGTGGATGGTCACTCAGCTCACATCCAGGGTGACGTTGCCACAACCTTAAACATGACCATAGCTTATCTACCCACGCATAGGCGTACAACATCCACGCATATGCGTAGAAAGCACACAGCTAGCATGAAGAGGTCAAGTCAGAGTTGCTCAAACATGGTTCCAACCCCAGAAGACCCACGCATATGCGTGGAAGTCCACGCATATGCGTGGAAAGCTACCTTAGTAACGTTTCTAGTCACGTTTTGGAGAAGCAAACATGACCCAGCTTAG 1617 0.4613 MLFTLLLCHTLQDEISSPISARIFELCDAELFPEAALQTSEVTSTNTAENITATATTTPTATATATAADTNNNNTTNNCNNLSVIFDSQEELDNDISASIDFSSSPVAAAFAVPSSLLPITTQPQQFDFSTENSVLKGLPYPHHHHQFPTDANTVVVPPPLMGNPLVVPSSVFEDECMSSMASSYVAMNTCSSSSSAPSCSYLSPAGIGVFMPPLTTALSADSALFGANILLASELQAQELDYQGENGGIFCADSIQRVFNPPDLQALSTESQQLVAGSGGSATLAPEISNLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENHRPACSNQEEDDEEEIVVKEDEDLIDSSDIFAHISGVNSFKKNEERKLADQETKLGSKTEQDSTHMRGRARICVLLIPQPTPKPTHMRRSPRICVDGHSAHIQGDVATTLNMTIAYLPTHRRTTSTHMRRKHTASMKRSSQSCSNMVPTPEDPRICVEVHAYAWKATLVTFLVTFWRSKHDPA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61312g00002 538 MobiDBLite consensus disorder prediction 346 363 - -
Stsc61312g00002 538 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 52 366 IPR045281 GO:0009909
Stsc61312g00002 538 MobiDBLite consensus disorder prediction 477 502 - -
Stsc61312g00002 538 Pfam CCT motif 307 349 IPR010402 GO:0005515
Stsc61312g00002 538 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
Stsc61312g00002 538 MobiDBLite consensus disorder prediction 400 419 - -
Stsc61312g00002 538 MobiDBLite consensus disorder prediction 346 367 - -
Stsc61312g00002 538 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61312g00002 Stsc-Chr61312 1293 9084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61312g00002 286 356 C2C2-CO-like Transcription Factor Family AT5G24930 39.437 8.17e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc61312g00002 CCT 7.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61312g00002 - - lja:Lj6g3v0082150.1 440.654