Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61307g00003 ATGGTGATCACCTCCACTGTCACAGATCCCGAAGAACAAACACAAAGCTTGCACTCTACTTTTGCTTCCAGATATGTGCGTGACCCTATTCCCAGGTTCAAGATGCCAGAGAAGTGCATACCAAAGGAAGCAGCATATCAGATAATAAACGATGAGTTGATGTTGGATGGAACACCAAGGCTCAACTTGGCATCTTTTGTCACCACTTGGATGGAGCCTGAATGTGATAAACTCATCATGGCTTCCCTTAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACCACTGAGCTCCAGAATCGGTGTGTTAATATGATAGCGCACCTATACCATGCTCCTATCGGTGATGATGAGACTGCGGTTGGTGTCGGAACCGTCGGATCATCAGAGGCAATAATGTTGGCAGGTCTAGCTTTTAAAAGGAAATGGCAGGCAAAGAGAAAAGCAGAAGGCAAACCTTATGATAAGCCTAACATAGTTACTGGCGCTAATGTTCAGGTTTGTTGGGAGAAGTTTGCACGGTACTTTGAGGTTGAGCTTAAGGAAGTGAAACTCACAGAAGGATACTATGTGATGGACCCTGTGAAAGCAGTTGAAATGGTTGATGAGAACACTATCTGTGTGGCAGCCATTTTGGGGTCGACTCTGACCGGAGAGTTTGAGGATGTGAGGCTTCTTAACGAGCTTCTCACCAAGAAGAATGATGAGACAGGATGGGATACTCCGATTCATGTTGATGCTGCCAGCGGAGGGTTCATTGCTCCATTTCTCTACCCTGATCTTGAGTGGGATTTCTGCTTACCATTAGTGAAGAGCATCAATGTTAGTGGTCATAAGTATGGTCTTGTCTACCCGGGTGTCGGTTGGGTTGTTTGGAGGAGTAAAGATGACTTGCCAGAAGAACTTGTTTTTCACATAAACTATCTTGGATCGGATCAGCCGACATTTACCCTCAATTTCTCCAAAGGCTCTAGTCAAATTATTGCTCAATACTACCAATTTATACGGCTTGGTACTGAGGGCTACAGAAATATCATGGAGAATTGCAGGGAGAATGCGAGAATTCTGAAGGAAGGAATCGAGAAAACTGGCCGGTTCAACATCGTTTCCAAGGACAATGGTGTGCCGCTTGTTGCCTTTTCTTTGAAAGACAGTAGCCAACACACGGTGTTTGAGGTGTCGGACCATCTGAGGAGATTCGGCTGGATAGTTCCGGCCTACACAATGCCGCCAGATGCGCAGCACATTGCAGTCCTCCGGGTGGTGATCAGGGAGGATTTCAGCCGCGGATTGGCGGAGAGACTGGTGTCCGACATAGAGAAAGTTGTGGATCTCCTGGACACACTTCCAAGCCCTCTAACAACGAAAACTGCACATGTGACCGCCGTTGCTAGTGAGACAAGTGAGAAGGTTAAGAAGAGTGCATTTGAGACTCAGAAAGAGATTGCCTTGTATTGGAAGAGGCTTGTGGATGGCAAAAGAGTTGGAGCATGTTAG 1500 0.464 MVITSTVTDPEEQTQSLHSTFASRYVRDPIPRFKMPEKCIPKEAAYQIINDELMLDGTPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNMIAHLYHAPIGDDETAVGVGTVGSSEAIMLAGLAFKRKWQAKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVRLLNELLTKKNDETGWDTPIHVDAASGGFIAPFLYPDLEWDFCLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGTEGYRNIMENCRENARILKEGIEKTGRFNIVSKDNGVPLVAFSLKDSSQHTVFEVSDHLRRFGWIVPAYTMPPDAQHIAVLRVVIREDFSRGLAERLVSDIEKVVDLLDTLPSPLTTKTAHVTAVASETSEKVKKSAFETQKEIALYWKRLVDGKRVGAC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61307g00003 499 FunFam Glutamate decarboxylase 364 451 - -
Stsc61307g00003 499 Gene3D - 1 68 - -
Stsc61307g00003 499 Gene3D - 364 451 - -
Stsc61307g00003 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Stsc61307g00003 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc61307g00003 499 FunFam Glutamate decarboxylase 69 363 - -
Stsc61307g00003 499 Gene3D - 69 363 IPR015421 GO:0003824
Stsc61307g00003 499 CDD DOPA_deC_like 62 442 - -
Stsc61307g00003 499 FunFam Glutamate decarboxylase 7 68 - -
Stsc61307g00003 499 NCBIfam glutamate decarboxylase 19 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Stsc61307g00003 499 SUPERFAMILY PLP-dependent transferases 14 446 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61307g00003 Stsc-Chr61307 13261 17014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61307g00003 1 499 Calmodulin-binding Proteins AT5G17330 77.800 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61307g00003 K01580 - gmx:100783047 920.228