Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61307g00002 ATGAGTGCTTCAACGAGGAAGAAGGTACTGAGGAAGTGCAAGATCAGAGGCCGCGTTCTCAAAACTAACGCTCTCGACGAGATCCTCTCCTTCGTCTCTCGCTTCCAAGGCCCCGACGAGGACGAAGCCATCGATCTCCTCCTTGACGAACTCGAACTCGAATCTCAGAAATCCACTATAATCGAGAAAGAGTCCGTGCACCGTGTGGTGAGCCGGCTTTTGGAAGCCGATGCGGCTGTCGAGGAGAGCTCCGATGCATTAGTTGCCGGCAGTTCTGCCATTCGCGTCGTCGACGCGTTCCTGGTCCCCAAGTTCAGATACGACCCTATTAGGAAGCAGTTCTACGAGCACACAGGCAGCTTGCCTATTCATGGAGGCGCATCAGCAAAAGCGGCTCTGTATAAGGACAGGTTTTTGTTGTTGTCCCAGAGGCTCGCTCGTGATCAGAATTTTTCGAAACCTGCTTTTGAATCAGAATTTTCACATTTTGGGAGCTGTGAGATATCTCCTATCCAATCTCTGGTTGGACAAACGGGTAGAAGATGGGTAATGGGAGTAATATCTCAGCTGGAGGATGGGCATTTTTATTTGGAAGATCTTACCGCTTCAGTTGAAATTAATTTGTCTAATGCTAAGATAACTACAGGATTCTTTTCTGAGAACACCATAGTTGTTGCTGAAGGCGAGATGCTGGTAGAGGGAATTTTTCAGGTTTTAACATGTGGATTTCCCCCATTAGAGGATAGGGATAAGTCACTTAGACAACTTGCAGGGCATGACTTTTTCGGTGCTGGTACTTTAACGAAAGAGGAAACTATCAGACTGGCAGACATGGAGAAAAAAGCTGTCAATGATATGTTTGTTATTCTATCTGATATTTGGCTAGACAATGAAGAGGCTATGGGAAAGCTGGAGACTGTGCTTGATGGTTTTGAGAGTGTGGAAGTTGTTCCTTCCTTATTTGTCTTCATGGGGAACTTCTCTTCTCATCCATGTAACCTTGCCTTTCATGCTTATTCAACCCTCAGGTCGCAGTTTGGAAAGTTAGGGCAAATAATTGCTGCCCATCCACGGCTAACAGAGCACAGTAAATTCCTGTTTATTCCAGGTCCTGATGATGCAGGCCCTTCAACAGTTCTGCCTAGGTGCGCTTTACCAAAATATTTGACAGAGGAGCTCCAAAATCACATACCAAATGCCATATTCTCAAGCAACCCCTGCAGGGTCAAGTTCTATACTCAAGAAATTGTATTTTTCCGCCAGGATATGCTGTATAGAATGCGTCGATCATGTTTAATGCCACCTTCTATGGAAGAAACTGATGATCCTTTTCAGCATCTTGTGGCTACCATTACCCATCAGTCTCATCTCTGTCCACTCCCTCTAACAGTGCAACCAATCATCTGGAACTATGACCACTGCCTTCATCTTTATCCAACTCCTCACACGATTGTCTTGGGTGACAGAAGTCAGCAGAAGGCATTCAAGTACACAGGAATCACTTGTTTCAACACTGGTTCCTTCTCAACTGACAGCACCTTTGTGGCATACCGGCCTTGCTCTCAAGAGGTTGAGTTATCGGCCTTGTAA 1590 0.4579 MSASTRKKVLRKCKIRGRVLKTNALDEILSFVSRFQGPDEDEAIDLLLDELELESQKSTIIEKESVHRVVSRLLEADAAVEESSDALVAGSSAIRVVDAFLVPKFRYDPIRKQFYEHTGSLPIHGGASAKAALYKDRFLLLSQRLARDQNFSKPAFESEFSHFGSCEISPIQSLVGQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSNAKITTGFFSENTIVVAEGEMLVEGIFQVLTCGFPPLEDRDKSLRQLAGHDFFGAGTLTKEETIRLADMEKKAVNDMFVILSDIWLDNEEAMGKLETVLDGFESVEVVPSLFVFMGNFSSHPCNLAFHAYSTLRSQFGKLGQIIAAHPRLTEHSKFLFIPGPDDAGPSTVLPRCALPKYLTEELQNHIPNAIFSSNPCRVKFYTQEIVFFRQDMLYRMRRSCLMPPSMEETDDPFQHLVATITHQSHLCPLPLTVQPIIWNYDHCLHLYPTPHTIVLGDRSQQKAFKYTGITCFNTGSFSTDSTFVAYRPCSQEVELSAL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61307g00002 529 PIRSF DNA_pol_epsilon_2 1 529 IPR016266 GO:0003677|GO:0006261|GO:0008622
Stsc61307g00002 529 Pfam DNA polymerase alpha/epsilon subunit B 287 492 IPR007185 GO:0003677|GO:0006260
Stsc61307g00002 529 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 529 IPR016266 GO:0003677|GO:0006261|GO:0008622
Stsc61307g00002 529 Gene3D - 2 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61307g00002 Stsc-Chr61307 7359 11276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61307g00002 16 486 Core DNA Replication Machinery Family AT5G22110 71.550 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61307g00002 K02325 - qsa:O6P43_008430 898.271