Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61299g00001 ATGGGAACGCCACCAACACAAGAGCTTATGAAGAAGATCGAGCAGCTAGAGGAAGGTCACGAGCATCTCAAGCAAGAGATGTCAAGACTCAAGCTTTCTGATGCCACCAGAGGCCACCACCACCACCACCATCGCCAGAGGTCTCACTCCGTCTCTCCGCAGCGTTCTAGATTGGGTGCGCCGCCGAAGAGGGCTGCCGCCGATGGAGCCTCAGCTGCCGCGTGGAAGAGAGGCTCTTGTTCTTTCAAGCAATCTTCGCCTCTGCAGAGAGAGAGTCGCTGTGATCCCAAAAAAGAAGGTGAAGGAGGTGGTGCAAAGTGTGGCCCTTCCGCCGTGAATTTTACTGATAAACAGTATCTCAATATTTTGCAGTCAATGGGACAGTCCGTTCATATATTGGATCTTACCTCTCGTATAATCTACTGGAACCGGAGTGCCGAAAATCTTTATGGTTATGCTGCGGAGGAAGCTCTTGGGCAGGATGGGATTGAGCTGATTGTTGACCCCAGGGATTTTGCCTTGGCTGATGATATTGTGAACCGTGTTGTTATGGGAGAGAGTTGGACAGGGCAATTCCCGGTCAAGAACAAGATGGGAGAGCAGTTCTTGGCGGTAGCTACGAATACTCCTTTCTATGATGATGATGGAAGCTTAGTTGGGATTATCTGTGTCTCCAGTGATTCGCGGCTCTTTGTTGAGACGAGAGTTCCATGCTTGGGCGCAAACAATGCCGAATCAGGTTCCGGCTCCAGGCCTCTTAGAAGTAGCATTTCAAATAAACTTGGCCTTGATACTCAGCAGCCGCTCCAAACTTCTATAGCATCAAAGTTCTCGACTTTGGCAACAAAGGTAAGTAACAAAGTTAAGTCAAGAATCCGGACAGGAGAAAATAACAGTGATCGTGAATGTGGGAGTGGAGGAAGTCATCAATCTGAGCATAGTTTCTCAGAAGTTGGTGTCGCGGACCACAGAGAGGATGCTAATTCCAGCGGAGCTAGCACACCCAGGGGTGATATGACGCATTCCCCTTTTGGTATGTTTTCTCATGCTGAGGAAAAATCCCAAGGAAAAACTTTGAAAGAATCTGGTGATGATAGTGAAGGAAAACCAATTCACAAGATCATAACGTCTAGGGCGGAAGCATGGATTCAAAAGAAAACACTGTCATGGCCATGGAAAGCAAATGATCAAGAAGGATCAGAGGCAAAAGATGTTCATGTTGTTGGGCCTTGCTTGTCAAATGATCATCGAGAAAATCAGTCGGTTAATCAGAGACAAGAGCGTCAGGGAGGTGAAAGAAATCGCTCTAGTAACAATGAGGCTTCAGGATCCTGGTCCTCGTCCTTCAATATTAACAGCACAAGTAGTGCCAGCAGCTGTGGAAGTGCCGGAAGTTGTGCTGTCAATAATAAAGTGGATATGGACTCTGATTGCTTGGATTATGAAATTTTGTGGGAAGACCTGACTATCGGAGAACAAATTGGACAAGGTTCCTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCGGTTAAGGTATTCTCAAAGCAAGAATATTCAGATGACGTAATACTGTCCTTCAGACAAGAAGTTTCTGTTATTAAAAGGCTTCGGCATCCAAATATTCTTCTCTTTATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGCGGAAGTTTGTGTCGCTTGTTACACAGAAACACGCCCAAACTTGACTGGAGACGGCGAGTGCATATGGCCTTGGATATTGCAAGAGGTGTGAATTATCTCCATCATTGCAATCCACCCATCATCCATAGAGATTTGAAGTCATCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTTGTGACTTTGGTCTTTCACGTCTTAAGCATGAAACATTTCTCACAACTAAGACAGGGAGGGGCACGCCACAATGGATGGCACCGGAAGTTCTTCGTAACGAACCGTCAGATGAGAAGTCTGACGTATACAGCTTTGGAGTAATATTGTGGGAACTTGCAACTGAAAAGATCCCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCCGTGGGGTTCATGGATCAGCGGCTTGAAATTCCAAAAGATGTTGATCCACGATGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAGCTTCCCGTCCAACATTCCGGGAACTGCTCGAGAAGCTTAGAGAGCTGCAAAGACGGTATGCCATTCAGTTCCAGGCAGCTCGATCAGGCGCCGGGGAAAGCCCCCAAAAGGAGTCCTAG 2301 0.4685 MGTPPTQELMKKIEQLEEGHEHLKQEMSRLKLSDATRGHHHHHHRQRSHSVSPQRSRLGAPPKRAAADGASAAAWKRGSCSFKQSSPLQRESRCDPKKEGEGGGAKCGPSAVNFTDKQYLNILQSMGQSVHILDLTSRIIYWNRSAENLYGYAAEEALGQDGIELIVDPRDFALADDIVNRVVMGESWTGQFPVKNKMGEQFLAVATNTPFYDDDGSLVGIICVSSDSRLFVETRVPCLGANNAESGSGSRPLRSSISNKLGLDTQQPLQTSIASKFSTLATKVSNKVKSRIRTGENNSDRECGSGGSHQSEHSFSEVGVADHREDANSSGASTPRGDMTHSPFGMFSHAEEKSQGKTLKESGDDSEGKPIHKIITSRAEAWIQKKTLSWPWKANDQEGSEAKDVHVVGPCLSNDHRENQSVNQRQERQGGERNRSSNNEASGSWSSSFNINSTSSASSCGSAGSCAVNNKVDMDSDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVIKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVCDFGLSRLKHETFLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSMQVIGAVGFMDQRLEIPKDVDPRWASIIESCWHSDPASRPTFRELLEKLRELQRRYAIQFQAARSGAGESPQKES 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61299g00001 766 Pfam Protein tyrosine and serine/threonine kinase 488 740 IPR001245 GO:0004672|GO:0006468
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 353 370 - -
Stsc61299g00001 766 SUPERFAMILY Protein kinase-like (PK-like) 477 739 IPR011009 -
Stsc61299g00001 766 ProSiteProfiles Protein kinase domain profile. 488 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61299g00001 766 CDD PAS 126 227 IPR000014 -
Stsc61299g00001 766 FunFam PAS domain-containing protein tyrosine kinase family protein 566 757 - -
Stsc61299g00001 766 Gene3D Phosphorylase Kinase; domain 1 481 565 - -
Stsc61299g00001 766 Gene3D PAS domain 127 230 - -
Stsc61299g00001 766 CDD STKc_MAP3K-like 494 740 - -
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 35 51 - -
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 411 448 - -
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 34 106 - -
Stsc61299g00001 766 ProSiteProfiles PAS repeat profile. 115 186 IPR000014 -
Stsc61299g00001 766 NCBIfam PAS domain S-box protein 117 227 IPR000014 -
Stsc61299g00001 766 FunFam PAS domain-containing protein tyrosine kinase 481 565 - -
Stsc61299g00001 766 PRINTS Tyrosine kinase catalytic domain signature 601 619 IPR001245 GO:0004672|GO:0006468
Stsc61299g00001 766 PRINTS Tyrosine kinase catalytic domain signature 667 689 IPR001245 GO:0004672|GO:0006468
Stsc61299g00001 766 PRINTS Tyrosine kinase catalytic domain signature 648 658 IPR001245 GO:0004672|GO:0006468
Stsc61299g00001 766 PRINTS Tyrosine kinase catalytic domain signature 711 733 IPR001245 GO:0004672|GO:0006468
Stsc61299g00001 766 PRINTS Tyrosine kinase catalytic domain signature 562 575 IPR001245 GO:0004672|GO:0006468
Stsc61299g00001 766 SUPERFAMILY PYP-like sensor domain (PAS domain) 121 224 IPR035965 -
Stsc61299g00001 766 Pfam PAS fold 118 225 IPR013767 GO:0006355
Stsc61299g00001 766 Gene3D Transferase(Phosphotransferase) domain 1 567 752 - -
Stsc61299g00001 766 Coils Coil 6 33 - -
Stsc61299g00001 766 SMART pas_2 117 184 IPR000014 -
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 299 315 - -
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 288 370 - -
Stsc61299g00001 766 MobiDBLite consensus disorder prediction 420 434 - -
Stsc61299g00001 766 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 111 746 - -
Stsc61299g00001 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Stsc61299g00001 766 SMART serkin_6 488 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61299g00001 Stsc-Chr61299 466 5180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61299g00001 1 757 MAP Kinase Kinase Kinase AT3G06620 60.691 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc61299g00001 PK_Tyr_Ser-Thr 1.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61299g00001 - - gmx:100800867 1157.51