Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61294g00001 ATGTCAGGGCAGCAACAAGCGCTAGCCGGATTAACACTTGACGACGTCTTATCAAATCAGAAAGCATTTCACCACTCACATTCCTACAAGAAGAATCGAAAGCCTTGGAAAACCTTTAAGGACACGCTTCTTCTAAAGCGTTACGGTTCTGCTTGGACATCGGCAATTGGAGTTCCCACCTCGGACATTACCCTCCCTAACCCAAACAGCGGAATCTTTACCCCATTCAGAGGCGGAAACTCCCTCAAACACTTTCAATCAATCTCCAACGACGATTCAACTCACCACCTCCACATGGATGACCAACCTAACAACGATGCCAATGTTGATGATGTCCCAGCTGCCTTTCCTCCCCCGTCACTAGCAGGCAAGGCCACATTCTCTCGTCGGAGCTCCACCCGCTATAGTTCTTCTGAGGCAACATTCACTGCTGGCGACCCCACAGAGCCAGCCCCTACCGGTGGTGCACTACTTCGTCCTCAGCTTTCTCGGCGAAACTCTTCTGGCATGGCCATAGGGTCAGAGCCGTACAGAAAAGGTCGCGTGGTGACATTTCGGGATAACTTGGACGATGAGGAGCAAGATGATGAGGATTGCTTGCGTCCTGATGGTAGTAGGACTTTGTCTGCAAGAGAGGCAGTAGCGGCACAAGAGGCGGCAGAGGCGGCTGCTGCTGGGGAGGTTGTTGAGGAGGGAGAGGAGGAAGGGGATGCGCAGCCGGCGATGATGTCACTAATGGACCTACTGGAGGAGACTGATAGAGAGATGGGGTTTGAAGGATCGAGGTACATTCTGAGTGATGATGAGGATTTTGATGAGGACGAGGAGGATGAGGATGGTGATGGAGTTTGTGGTAATGATATGGAATACACTTGCTCAGTTTGCATGGTCAGGCATAAGGCTAATGCTATCAGCCGTTGTGGTCACTCTTATTGTAGGATGTGTTCTAGGGAACTCATGGTTGCTAAGGGAAACTGCCCTCTATGCAATAATTTCGTGGTGGAGATTCTTCACATTTTTTGA 1023 0.5034 MSGQQQALAGLTLDDVLSNQKAFHHSHSYKKNRKPWKTFKDTLLLKRYGSAWTSAIGVPTSDITLPNPNSGIFTPFRGGNSLKHFQSISNDDSTHHLHMDDQPNNDANVDDVPAAFPPPSLAGKATFSRRSSTRYSSSEATFTAGDPTEPAPTGGALLRPQLSRRNSSGMAIGSEPYRKGRVVTFRDNLDDEEQDDEDCLRPDGSRTLSAREAVAAQEAAEAAAAGEVVEEGEEEGDAQPAMMSLMDLLEETDREMGFEGSRYILSDDEDFDEDEEDEDGDGVCGNDMEYTCSVCMVRHKANAISRCGHSYCRMCSRELMVAKGNCPLCNNFVVEILHIF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61294g00001 340 MobiDBLite consensus disorder prediction 89 105 - -
Stsc61294g00001 340 MobiDBLite consensus disorder prediction 212 238 - -
Stsc61294g00001 340 PANTHER OS01G0917900 PROTEIN 5 340 - -
Stsc61294g00001 340 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Stsc61294g00001 340 Pfam Zinc finger, C3HC4 type (RING finger) 290 332 - -
Stsc61294g00001 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 340 IPR013083 -
Stsc61294g00001 340 MobiDBLite consensus disorder prediction 125 144 - -
Stsc61294g00001 340 SMART ring_2 292 329 IPR001841 -
Stsc61294g00001 340 MobiDBLite consensus disorder prediction 86 176 - -
Stsc61294g00001 340 SUPERFAMILY RING/U-box 291 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61294g00001 Stsc-Chr61294 6972 12548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61294g00001 31 340 C3H Transcription Factor Family AT3G07120 36.792 2.55e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61294g00001 - - adu:107464709 390.193