Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61293g00002 ATGGCATTCCTTCCACAACCACGTGAATCAGCAGAACCCGAAGATTCCGAAGAAACCATCGTCACAAGCGTAGCAGCTTCAGCTAGAGCAATAGCAGCAGCAGAAGAAGATAACGGAACCATCGACGTTCACACAACAAGAGGCGCAACCATAAGGTACCTTCCATTGGATCATCTCTACTCTGCCACGTCACCCTGCAGTGGCTCCTCCAACGTCATGTCCAAGAAAGTTAAGGCTCGCAAGCTCACGCCGCATTTTCACCAAAACGACGACTTTACCGCCAAAACGAACAGCAACAACAACAACAACAACGATGGTGGTGGTGGTGAGGCTGAGAATGTTTCTACTGCTAGTTCTGTTATTGTTCCGCCGAATGATTTTGACAGCAATGATGATAAGCCACCGCTTGTTTTTGTTTACTCTCGGCGGAGGAAGAGGGGTGGTTCTGGTTCTCCTGCTACGTCGTTTTACGATTCGGTTTCGGGTCGGGTTGCGAGGGACCCGGCGGAGAGGGCTGCTTCGAAAAAGAGGAAGATTGGGACCACCGAGCTGGAGAAATTGGGAGTGGATTTGGGCGCTTTGGGGGTGCTTGACGATGGGCCTAGGTTGAGAGAATGCCGCATTGGTAATAACGATGGTGGTGGTTCAGTGGAGAAGTTGGTATCAGAATCTCGTACAGTGAAGAGATGGGTCGGGTTGAGTTTTGATAATGCTGACCCTGAGGCGTTCATTGGGTTACGATGCAAGGTGTTTTGGCCAATGGATATAAAGTGGTATGCTGGCCACGTCAAAGGTTATGATATGGAAACTAAGATACACCATGTTAAATATGACGACGGCGAGGAAGAAAATTTAATTCTTTCGAATGAAAATGTGAAATTTCATATCTCCCGCGAGGAGATGAAGCGTTTGAATTTGAGTTATGGAAAAGCTCGTGACAGTAATGTCTCTGATTGTGACGTTGAAGAGATGCTTGCGATGGCTGCAAGTTTGAATGATTGTCAACAATTTGAACCTGGAGACATTGTATGGGCTAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCACGCAAGTGCAAGGGTTTGAAGACGACATTGGGAGGAAAATCAGTTCCTGTCCAGTTTTTTGGCACCCATGATTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCATTCTTAAGTGGACTTCTTACCGAGCTATACACAAAGTGCAACAAAACTAGTTTTGTTGACAGCATAGAAGAGGCAAAGAGGTATTTAAATGAACAGAAGCTTCCCTCAGAGATGCTAGAGTTGCAAAAAGGATGTACAGCTGATGACTGTAAAAATGTAACTGGAGAGGATGGAGGATGTACAGATTCAGGAGAAGATTCTTTGAGTGACAAAGAGCTTTCAACAGCATTGGAAAATATTGAATTTCCCTTGGAAGTAGGAGACCTACAAATTATAAGCCTTGGAAAATTAGTTGAAGATTCTTCATCTTTCCGTGATGGAAGATCCATCTGGCCTGAAGGGTACACTGCAGTGAGGAAGTTTACTTCAGTCTCTGATGCTAAAGTTTCTGCTGCTTATAAAATGGAGGTCCTGAGGGATCCAGAATCCAAAAGACGATCTCTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGATTATACACCATCAGCCTGCTGGAATCAAATATACAAAAGGATAAGTGAAATAGAAAAGGATGGTTCTGAAGCTACCATTGCAGAGGGTAGGGTAGAAAGCGGATATGAATCTGGGACTGATATGTTTGGTTTCTCCAATCCTGAAGTGGCTAAACTAATAAAGGTATTATCCAAATCCAAAGTTTCTTCAAAGAACTCAAGTTGGAAGTTAGGTTCCAGAAGATGTAATGACCTGCCTGCTGGTTATAGGCCGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTCTGCCATATGGACGAGG 1984 0.4441 MAFLPQPRESAEPEDSEETIVTSVAASARAIAAAEEDNGTIDVHTTRGATIRYLPLDHLYSATSPCSGSSNVMSKKVKARKLTPHFHQNDDFTAKTNSNNNNNNDGGGGEAENVSTASSVIVPPNDFDSNDDKPPLVFVYSRRRKRGGSGSPATSFYDSVSGRVARDPAERAASKKRKIGTTELEKLGVDLGALGVLDDGPRLRECRIGNNDGGGSVEKLVSESRTVKRWVGLSFDNADPEAFIGLRCKVFWPMDIKWYAGHVKGYDMETKIHHVKYDDGEEENLILSNENVKFHISREEMKRLNLSYGKARDSNVSDCDVEEMLAMAASLNDCQQFEPGDIVWAKLTGHAMWPAVVLDESLARKCKGLKTTLGGKSVPVQFFGTHDFARVRLQQVKSFLSGLLTELYTKCNKTSFVDSIEEAKRYLNEQKLPSEMLELQKGCTADDCKNVTGEDGGCTDSGEDSLSDKELSTALENIEFPLEVGDLQIISLGKLVEDSSSFRDGRSIWPEGYTAVRKFTSVSDAKVSAAYKMEVLRDPESKRRSLFRVTVDGGEQFNDYTPSACWNQIYKRISEIEKDGSEATIAEGRVESGYESGTDMFGFSNPEVAKLIKVLSKSKVSSKNSSWKLGSRRCNDLPAGYRPVHINWFDLDKCNVCHMDE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61293g00002 661 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 110 303 IPR039776 GO:0007064
Stsc61293g00002 661 SUPERFAMILY Tudor/PWWP/MBT 333 433 - -
Stsc61293g00002 661 Gene3D - 243 293 - -
Stsc61293g00002 661 SUPERFAMILY Tudor/PWWP/MBT 242 285 - -
Stsc61293g00002 661 SMART fyrc_3 546 635 IPR003889 GO:0005634
Stsc61293g00002 661 Pfam F/Y-rich N-terminus 485 535 IPR003888 GO:0005634
Stsc61293g00002 661 Gene3D - 326 437 - -
Stsc61293g00002 661 ProSiteProfiles FYR domain FYRN motif profile. 479 538 IPR003888 GO:0005634
Stsc61293g00002 661 ProSiteProfiles FYR domain FYRC motif profile. 542 628 IPR003889 GO:0005634
Stsc61293g00002 661 CDD PWWP_AtATX1-like 338 433 - -
Stsc61293g00002 661 SMART PWWP_4 337 400 IPR000313 -
Stsc61293g00002 661 MobiDBLite consensus disorder prediction 1 21 - -
Stsc61293g00002 661 MobiDBLite consensus disorder prediction 89 114 - -
Stsc61293g00002 661 SMART fyrn_3 494 538 IPR003888 GO:0005634
Stsc61293g00002 661 MobiDBLite consensus disorder prediction 86 114 - -
Stsc61293g00002 661 Pfam PWWP domain 340 427 IPR000313 -
Stsc61293g00002 661 CDD Tudor_Agenet_AtEML-like 244 294 - -
Stsc61293g00002 661 Gene3D - 480 620 - -
Stsc61293g00002 661 ProSiteProfiles PWWP domain profile. 339 402 IPR000313 -
Stsc61293g00002 661 Pfam F/Y rich C-terminus 546 618 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61293g00002 Stsc-Chr61293 20415 24975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61293g00002 463 615 JUMONJI Transcription Factor Family AT1G30810 29.677 1.16e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61293g00002 - - gmx:100808923 808.135