Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61281g00003 ATGGAAAGGGATGTGTGTGATCTTTCTCCTACATGGGATTGTGAAAATGGCAATAATAGTGTGGAGAAAAGGCTTAGGCTATTTGGGTTTGAGCTGAATCCATCCTCAAACAATGTCAAAGATCCTAACACTACAGAAGGATCAGATGAAAGTGTGAATTCATCATCCAACTCAGTTTCTTCAGGAGGAGATAACAAAACCACAGCACAAGACCATCAAAGAAGCACATCAATAGCCACAACAACCACTAATAATGAGAAGAAGTTTGAGTGCCAATACTGTTTGAAGGAATTTGCAAATTCGCAAGCACTTGGTGGGCACCAAAATGCTCACAAGAAAGAAAGGATGAAGAAGAAGAGGTTGCAGCTTCAAGCAAGGAAAGCCACCATAAACTACTATCTTCAACAACCTAATTTCCAAAACAGTAGCCACAGTCATCATCATCGTTTCTCTTACCATAATAATCATCATGGATCTTCTTGGTTCTATGATCCTTCTTCCTATAACTACTATTCTGAGTACACACTATGTGAAGAACCCCAAATTAGCTTCAACCCCAATGATCAAGATTCAAACTTTTTGGTTGAGAAATCATCAAATAGTAATTGGAATTCATCTCTACCATCATCACATCAAGCTGCTGCTGTTTCTTCACTGCAAGATTCTTGCATGTTCAATTTCTCTAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGCTTACAACAACTTCAAGCCTTGCAACTTCCCTGATTCTTCTTCAAATAATCATCAAATTCAAAGTAATAACAAAGCTTTGGATCTTCAATTAGGCCTCAATTTGCAGTCAAATACAAGAAGGGCCTAA 885 0.3525 MERDVCDLSPTWDCENGNNSVEKRLRLFGFELNPSSNNVKDPNTTEGSDESVNSSSNSVSSGGDNKTTAQDHQRSTSIATTTTNNEKKFECQYCLKEFANSQALGGHQNAHKKERMKKKRLQLQARKATINYYLQQPNFQNSSHSHHHRFSYHNNHHGSSWFYDPSSYNYYSEYTLCEEPQISFNPNDQDSNFLVEKSSNSNWNSSLPSSHQAAAVSSLQDSCMFNFSNSNNNNNNNNNNNNNNNNNNNNNKAYNNFKPCNFPDSSSNNHQIQSNNKALDLQLGLNLQSNTRRA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61281g00003 294 MobiDBLite consensus disorder prediction 188 208 - -
Stsc61281g00003 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Stsc61281g00003 294 SUPERFAMILY beta-beta-alpha zinc fingers 85 116 IPR036236 -
Stsc61281g00003 294 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Stsc61281g00003 294 MobiDBLite consensus disorder prediction 227 272 - -
Stsc61281g00003 294 Gene3D Classic Zinc Finger 65 149 - -
Stsc61281g00003 294 MobiDBLite consensus disorder prediction 32 81 - -
Stsc61281g00003 294 PANTHER ZINC FINGER PROTEIN 5 19 288 IPR044299 GO:0010090
Stsc61281g00003 294 Pfam C2H2-type zinc finger 89 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61281g00003 Stsc-Chr61281 10982 12231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61281g00003 24 132 C2H2 Transcription Factor Family AT1G68360 43.363 3.64e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61281g00003 - - adu:107488933 400.593