Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61277g00004 ATGGCTTCCAAGGCAGCATCAGAAGGAAAAGCCATCGGCATCGACCTCGGCACCACCTACAGCTGCGTCGGAGTCTGGCAAAACGACCGCGTTGAGATCATAGCTAACGACCAAGGCAACAGAACTACACCTTCCTATGTCGCCTTCACTGACACCGAGCGTCTCATCGGCGATGCAGCCAAGAACCAAGTCGCCATGAACCCTCACAACACCGTCTTCGACGCCAAGCGTCTCATCGGTCGCAAATTCTCCGATCCTTCCGTCCAGGCCGACATGAGGCACTGGCCTTTTAAGGTTGTCGCTGGCCCCGCCGACAAGCCTATGATCGTTGTTAACTACAAAGGCGAGGAGAAGCAGTTTGCACCTGAAGAGATTTCTTCCATGGTGTTAACCAAGATGAAGGAAGTTGCTGAAGCTTTTCTTGGTCACACTATCAAGAACGCTGTCATCACTGTCCCTGCTTACTTCAATGATTCTCAGAGACAAGCCACCAAAGATGCCGGCGCCATTGCCGGTCTCAACGTTTTGAGGATCATCAATGAGCCTACTGCTGCAGCCATTGCTTATGGCTTGGACAAGAAGGCTTCGAGATCCGGTGAAAAGAACGTGCTGATCTTTGACCTTGGTGGTGGAACCTTTGATGTATCGCTCCTTACTATTGAGGAAGGAATCTTTGAGGTGAAGGCCACCGCCGGAGACACTCATTTAGGTGGTGAAGACTTTGATAATAGGCTTGTGAATCACTTCGTGGCGGAGTTCAAGAGGAAGCACAAGAAAGATATTACTAGCAATGCTAGAGCTCTTAGGAGGTTGAGAACTGCTTGTGAGAGAGCTAAAAGGACTCTTTCTTCAACTGCTCAAACCACCATTGAGATTGATTCACTATATGAAGGGATTGATTTCTATTCAACCATTACAAGGGCGAGGTTCGAGGAACTGAACATGGATTTGTTCAGGAAGTGCATGGAGCCGGTGGAGAAGTGCTTGAGGGATTCAAAGATTGATAAGAGCCAAGTTCATGATGTTGTTCTTGTTGGAGGATCAACAAGAATTCCAAAAGTGCAGCAGCTCTTGCAGGATTTCTTCAATGGCAAGGAACTCTGCAAGAGCATCAACCCTGATGAAGCTGTGGCTTATGGTGCTGCTGTTCAGGCTGCTATATTGAGTGGTGAAGGCAATGAGAAGGTTCAAGATTTGTTGCTCCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTGATTCCTAGAAACACTACCATTCCTACCAAGAAAGAGCAGATTTTCTCAACCTATTCGGACAATCAACCTGGTGTGCTGATTCAGGTGTATGAAGGTGAGAGGGCGAGGACTAAAGATAACAATCTTTTGGGGAAATTCGAGCTGACCGGAATCCCACCGGCTCCTCGAGGTGTTCCTCAGATCAATGTTTGCTTTGACATTGATGCCAACGGAATCTTGAACGTGTCGGCGGAGGATAAGACGGCCGGGGTGAAGAACAAGATCACTATCACTAATGATAAAGGGAGGTTAAGCAAAGAAGAGATTGAAAGGATGGTTCAAGAGGCAGAGAAGTACAAGGCAGAGGATGAGGAAGTGAAGAAGAAAGTGGAAGCTAAGAATGCTTTGGAGAATTATGCATATAACATGAGGAACACTCTGAAGGATGAGAAGATTGGTGGCAAGTTGGATCCTTCTGATAAGCAGAAGATTGAGAAGGCTGTTGATGATGCTATTGAGTGGGTTGAAGGGAATCAGTTGGCTGAGGTGGATGAATTTGAAGATAAGTTGAAGGAATTGGAAGGTTTGTGTAATCCAATTATTGCTAAGATGTATCAAGGTGGTGGTGGTGATGTGCCTATGGGAGGTGGTGCAGATGGTGCATCTTATGGAAATTCTTCATCTGGTGGCAACAATGGTGCTGGTCCTAAGATTGAAGAAGTTGATTAA 1998 0.4484 MASKAASEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRKFSDPSVQADMRHWPFKVVAGPADKPMIVVNYKGEEKQFAPEEISSMVLTKMKEVAEAFLGHTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDITSNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLXXXXXXXXXXXXXXXXXXXXXXXXXXVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTLKDEKIGGKLDPSDKQKIEKAVDDAIEWVEGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGGGGDVPMGGGADGASYGNSSSGGNNGAGPKIEEVD 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61277g00004 665 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc61277g00004 665 Coils Coil 402 402 - -
Stsc61277g00004 665 FunFam heat shock cognate 70 kDa protein-like 556 630 - -
Stsc61277g00004 665 PANTHER HEAT SHOCK PROTEIN 70KDA 11 594 IPR013126 GO:0005524|GO:0140662
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 488 504 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 10 23 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc61277g00004 665 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc61277g00004 665 Gene3D - 194 368 - -
Stsc61277g00004 665 CDD HSPA1-2_6-8-like_NBD 11 389 - -
Stsc61277g00004 665 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc61277g00004 665 Gene3D - 73 128 - -
Stsc61277g00004 665 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc61277g00004 665 FunFam Heat shock 70 kDa protein 200 263 - -
Stsc61277g00004 665 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 427 560 IPR029047 -
Stsc61277g00004 665 SUPERFAMILY Actin-like ATPase domain 10 193 IPR043129 -
Stsc61277g00004 665 SUPERFAMILY Actin-like ATPase domain 199 390 IPR043129 -
Stsc61277g00004 665 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 421 556 IPR029047 -
Stsc61277g00004 665 MobiDBLite consensus disorder prediction 630 665 - -
Stsc61277g00004 665 FunFam Heat shock 70 kDa 237 320 - -
Stsc61277g00004 665 FunFam Heat shock 70 kDa protein 73 128 - -
Stsc61277g00004 665 ProSitePatterns Heat shock hsp70 proteins family signature 1. 14 21 IPR018181 -
Stsc61277g00004 665 FunFam Heat shock 70 kDa 422 556 - -
Stsc61277g00004 665 Pfam Hsp70 protein 11 629 IPR013126 GO:0005524|GO:0140662
Stsc61277g00004 665 Gene3D - 12 386 - -
Stsc61277g00004 665 Coils Coil 529 556 - -
Stsc61277g00004 665 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 554 633 IPR029048 -
Stsc61277g00004 665 FunFam Heat shock protein 70 12 199 - -
Stsc61277g00004 665 FunFam Heat shock cognate 70 kDa protein 2 321 368 - -
Stsc61277g00004 665 Gene3D - 557 630 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61277g00004 Stsc-Chr61277 16071 18615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61277g00004 1 665 Calmodulin-binding Proteins AT1G16030 82.105 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61277g00004 K03283 - pvy:116132160 1102.04