Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61273g00001 ATGTTGTGTGCTTGCTCAGGGGAGCAATTCAAGTTCGAGGAGGCGCCGCCGCAGTCGCCGGAGTCATTGGCGACGAGGGATTTCTCGGCCAGTGGACTTTCTTCATCAAGGACTGGGGGTGATTGGGATTCTAAATTTGATCAGAACCAAGTTGAAGAAGCTGAATCAACTCTTAAAGAAGCTCTCTCTTTAAACTATGAGGAAGCTCGCGCTTTGCTGGGGAGACTTGAATATCAAAGAGGGAACTATGATGCTGCCCTTCAAGTTTTTCAGGGCATTGAAATCAAGGCCTTGACACCAAGGATGATAAGAGCCATTGCTAAAAGAACTGGGCCAAGAAAACAACGTTCTAGAGCTGATAATGTGGTCCCTAATGTGATGTCAATGCATTCAGTAAGCCTTCTTGTTGAGGCAATTTTGCTCAAATCCAAATCCTTAGAAGAGCTCGGCCGATACACTGAAGCTGCAAGTACATGCAGCATGATTTTGGACACAGTTGAGTCTGCTCTTCCTAACGGAATGCCGGATGGAATCGCCCAAGAGTGTAAGTTGCAAGACATGTTCCACAGAGCAATTGAACTGCTTCCAACTCTATGGATCAAGGCAGGCAATTTAGGCGAAGCTGTCACGGCTTATCGCCGTGCTTTGATCAAGCCGTGGAATATGGAGCCGGGAAAGTTGGCCAGTATGCAAAAAGATTTGGCCACCACACTACTCTATGGTGGTGTTGAAGTAGACCTGCCGCCACAATTACAAGCGAGGTATCCAGAAACTCCAAAGAGTAACATTGAAGAAGCAATACTTTTGCTATTAGTACTCATGGAAAAGATGGTGCTTCAGGAAATAGAATGGGACAGTGAAACAGCAGATCATCTTACATTCGCACTTTCTGTTACTGGAATGTTTGAATCACTGGCTGATTATGTAGAGCAGATCCTTCCTGGTGTCTATGATCGAGCCGAGAGATGGTACTTTCTTGCTCTTTGTTACAGTGCAGCCGGCCAGGACGAAGTGGCCTTGAACTTATGGAGGAAGTCTTGTGGTAGTTCCAAAGCAAATCGCAGACCCCATTTCCCTTCATTTTTGTTTGGTGCAAAACTGTGTTCCAAATATCCAAACCATGCTCTCGAAGGCATTAAGTTTTCCCGCGAAGCTATCGATCTAGCAAGGCTTCAAAATAAGCATTTTCTGAGTCAGGGGAAAAATTTTCTGGGTGTTTGCTATGGCGCTGCGGCTAGAAGATCAGTGCTGGATTCTGAAAGGACTATCTTTCAAAGAGAGTCTTTGAACTTTCTAAATGAGGCTGCTATAAGTAAAAGAGATGATCCTGAAGTGATGTTCAACCTTGGACTTGAAAATGCAATTCAAAGGAATCTCGATGCAGCTTTCAACAATATAATGATGTATTCGGATATGACCGTTGGTAGCTCGAGAAGAGGTTGGCAGCTGTTAGCCCTCATAGTATCTGCACAACAACGGTTTAAGGATTCAGAAATGATAGTTGATTTTGCATTGGATGATACCGAAAAGATGGACCAGTTAGAACTTCTGAGATTGAAAGCAGTGCTTCAAATCGCGCAGCAGAAACCCAAGCAAGCAGTAGAGACCTACAGAATCTTGCTAGCACTGATCCAATCTAAAAAGGAGCCTTGGCATCAAGCTAAGAAGAACTTTGATCAAGCAAAAGCATTCACACATGAGATTAAGATCATGAAATCATGTCTTGGCAGGCACTTCCTGAAAGGAAGAATGATATTTGAAGCACAATCATTATACAAGGAAGCCTTTGTTTCATTCTCAGTCTCATTGGGAATAGAACCAGATTACATTCCAAGTATTATTTCATCTGCAGAATTGATGATCAAACTTGGCATGCAATCACTTCCAATTGCAAGAAGCTTTTTGATGAATGCATTGAGAATAGAACCAACAAATCATGATGCTTGGTTCAACCTTGGAATGGTTTCAAAAATGGAAGGTTCATTACAACAAGCTGCAGATTTCTTTCAAGCTGCATATGAACTCAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTTATAA 2061 0.4284 MLCACSGEQFKFEEAPPQSPESLATRDFSASGLSSSRTGGDWDSKFDQNQVEEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIEIKALTPRMIRAIAKRTGPRKQRSRADNVVPNVMSMHSVSLLVEAILLKSKSLEELGRYTEAASTCSMILDTVESALPNGMPDGIAQECKLQDMFHRAIELLPTLWIKAGNLGEAVTAYRRALIKPWNMEPGKLASMQKDLATTLLYGGVEVDLPPQLQARYPETPKSNIEEAILLLLVLMEKMVLQEIEWDSETADHLTFALSVTGMFESLADYVEQILPGVYDRAERWYFLALCYSAAGQDEVALNLWRKSCGSSKANRRPHFPSFLFGAKLCSKYPNHALEGIKFSREAIDLARLQNKHFLSQGKNFLGVCYGAAARRSVLDSERTIFQRESLNFLNEAAISKRDDPEVMFNLGLENAIQRNLDAAFNNIMMYSDMTVGSSRRGWQLLALIVSAQQRFKDSEMIVDFALDDTEKMDQLELLRLKAVLQIAQQKPKQAVETYRILLALIQSKKEPWHQAKKNFDQAKAFTHEIKIMKSCLGRHFLKGRMIFEAQSLYKEAFVSFSVSLGIEPDYIPSIISSAELMIKLGMQSLPIARSFLMNALRIEPTNHDAWFNLGMVSKMEGSLQQAADFFQAAYELKLSAPVQKFEL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61273g00001 686 MobiDBLite consensus disorder prediction 22 45 - -
Stsc61273g00001 686 Pfam Tetratricopeptide repeat 44 92 - -
Stsc61273g00001 686 SUPERFAMILY TPR-like 427 595 IPR011990 GO:0005515
Stsc61273g00001 686 Gene3D Tetratricopeptide repeat domain 260 567 IPR011990 GO:0005515
Stsc61273g00001 686 Gene3D Tetratricopeptide repeat domain 40 242 IPR011990 GO:0005515
Stsc61273g00001 686 Coils Coil 59 79 - -
Stsc61273g00001 686 PANTHER PROTEIN NPG1 1 561 IPR043376 -
Stsc61273g00001 686 Gene3D Tetratricopeptide repeat domain 573 682 IPR011990 GO:0005515
Stsc61273g00001 686 ProSiteProfiles TPR repeat profile. 646 679 IPR019734 GO:0005515
Stsc61273g00001 686 SMART tpr_5 67 102 IPR019734 GO:0005515
Stsc61273g00001 686 SMART tpr_5 646 679 IPR019734 GO:0005515
Stsc61273g00001 686 SMART tpr_5 320 353 IPR019734 GO:0005515
Stsc61273g00001 686 SMART tpr_5 514 547 IPR019734 GO:0005515
Stsc61273g00001 686 SUPERFAMILY TPR-like 46 462 IPR011990 GO:0005515
Stsc61273g00001 686 SUPERFAMILY TPR-like 46 670 IPR011990 GO:0005515
Stsc61273g00001 686 MobiDBLite consensus disorder prediction 14 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61273g00001 Stsc-Chr61273 8470 11370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61273g00001 1 684 Calmodulin-binding Proteins AT1G27460 57.265 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61273g00001 K21843 - gmx:100799086 1011.91