Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61267g00006 ATGGATCATGGGGACCAAATGGCATCTTACTATATGCAGCAGAGAGGAATACCTGGTTCTGGAGGACAGCCGGAGTTTTCAGCCGGTATTCGGTCGCTGTCTAACCCCAACCTACCATTTCAATCCGGCATTGGTGGTGGTGGCTCAATTGGATCCACTATACAGCTAGAATCTTCGGGGATTTCGTCCCATGGTGTCAATGTTGGTGCTCCTCCGGGGGCACCACCCGGGGAGCCTGTCAAAAGGAAGAGGGGAAGGCCGAGGAAATATGGGACTGATGGAACTGTGTTGGCTCTTACACCAACCTCGTCGAGTCATCCTGGAGCTATGACGACACCCGGCCAGAAACGTGGCAGAGGACGGCCCCCGGGGAGTGGGAAGAAACAGCAATTGGCATCACTTGGTGAAATGATTTCTGGTTCTGCAGGGATGGGATTCACTCCTCATGTCATCAACATAGCAAGTGGAGAAGACATTGCAACGAAAATTATGGCATTTTCTCAGCAGGGGTCTAGATTTGTGTTTATTTTGTCTGCCACCGGTGCTGTTTCCACCGTCACACTTCGCCAACCTTCAACCTCAGGCGGCTCTGTCACATATGAGGGGCGTTTCGAGATATTGTGCCTGTCGGGCTCTTACTTGCTTACTGATAATGCTGGCTCACGCAATCGATCTGGCGGACTAACTGTTTCCCTTGCTAGTCCTGACGGACGAGTCATTGGTGGAGGAGTTGGAGGAGTGCTCATTGCATCAAGTCCTGTTCAGGTTATTGTTGGAAGCTTTATATGGGGTGGATCAAGGACAAAGAACAAGAAAAAGGAAAGCTCAGAAAGGGTAGAGGCTGCTATGGAGTCGGACCATCAAGCGATTCACAATCCGGCTGCACTGAACAGCATTTCGGCTAGTCAAAATCTTACTCAAACCCCACCATCTTTGAGTCCGTGGCCGGCCTCGCGACCGTTGGATATGCGCAATTCCCATGTCGACATCGATCTAATGCGCGGGTGA 1008 0.5129 MDHGDQMASYYMQQRGIPGSGGQPEFSAGIRSLSNPNLPFQSGIGGGGSIGSTIQLESSGISSHGVNVGAPPGAPPGEPVKRKRGRPRKYGTDGTVLALTPTSSSHPGAMTTPGQKRGRGRPPGSGKKQQLASLGEMISGSAGMGFTPHVINIASGEDIATKIMAFSQQGSRFVFILSATGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLTDNAGSRNRSGGLTVSLASPDGRVIGGGVGGVLIASSPVQVIVGSFIWGGSRTKNKKKESSERVEAAMESDHQAIHNPAALNSISASQNLTQTPPSLSPWPASRPLDMRNSHVDIDLMRG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61267g00006 335 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Stsc61267g00006 335 SMART AT_hook_2 116 128 IPR017956 GO:0003677
Stsc61267g00006 335 Gene3D - 148 285 - -
Stsc61267g00006 335 FunFam AT-hook motif nuclear-localized protein 1-like 148 279 - -
Stsc61267g00006 335 MobiDBLite consensus disorder prediction 61 130 - -
Stsc61267g00006 335 CDD DUF296 147 261 IPR005175 -
Stsc61267g00006 335 MobiDBLite consensus disorder prediction 1 33 - -
Stsc61267g00006 335 ProSiteProfiles PPC domain profile profile. 142 282 IPR005175 -
Stsc61267g00006 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 146 263 - -
Stsc61267g00006 335 MobiDBLite consensus disorder prediction 96 111 - -
Stsc61267g00006 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 308 IPR039605 GO:0003680
Stsc61267g00006 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61267g00006 Stsc-Chr61267 21503 24866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61267g00006 80 335 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 56.061 8.71e-78 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61267g00006 - - gmx:100814615 505.368