Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61265g00005 ATGCTTGCTTACATACTTTCTTCTTCTTCTCTTGCCATTGAAATTGATTCCATTGCTGAGTCTCAGTATCTCACTGATAACATGACCTTAGTTTCCCAAGGTGAAACTTTTGAACTTGGCTTCTTCAGCCTTGGCAATTCGCCCAAGCGTTACTTGGGAATTTGGTACAAGAAAATCCCAGTTCAGACAGTTGTTTGGGTTGCCAATAGGGACAAAGCCATTAATGGTACCTCAGGAAGATTAGAATTGAACAACAGCACAGGCAATCTTGTACTCAAAGAAAATGAGACTATAATTTGGAACACTACCATTCAAAAGCAAGCAAAGAATCCAGTGCTAGAGCTTTTGGACAGTGGAAACCTTGTGGTAAGAAATGATGGAGACTCAAATCCAGACGACTATTTGTGGCAAAGCTTTGATCATCCATGCGACACGCAGTTGCAAGGAATGAAGATAGGAAGGGACCTCAAGAATAGTTTAGAGTGGAGACTAACACCCTGGAAGAGCCCGGATGATCCGTCGGCCGGAGACTTTTCTTATGGTTTTTTGCTGAGTGATTATCCTGAACTTTCAGTTATGAAAGGAACAAAAAAGCAACTTCTGATTGGACCTTGGAATGGCATATACTTTAGTTCAATCCCAGGTACTACCCTTGATCTACTTCATGAGATCGATTATGTTGCGAACGAGGACGAGATACTCTTCACCTTTAGACCCAATATTGAGGCTGTCCTCACAAGACTTGTAATAAACCAATCAAGTCATATTGTTGTTCACTATGTCTGGGAAGATACAGTTCAAAGTTGGAAACAATATGGATTCATATCACTTGATGTGTGTGCTTATGGTGTTTGTGGACCCTATGGTTATTGCAGTGTAGCAGACACAAATGTTTGCCAGTGTTTAGAAGGGTTCACTCCAAAGTCACCACAATCATGGAGCTCATCCAACTGGACTCAAGGATGCGTCCGAAACGCACCATTAAGCTGTAATAATGTCACAAGCACAGATCGGTTTGTCAACTATACCGGCTTGAAAGTTCCAGATACTCAATATACTAAGGTGGATAAGAATATTACTTTAGATGAATGCAAAGAACTTTGCTTGAAGAATTGTTCTTGTATGGCTTATACTAATTCAAATATAAGTGGAAATGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGACCTCAAGAAGTTTCAAGAAAAGGGACAAAATCTATTTATCCGAATGTCAGGTTCTAATTCAGTGTTACAGCATGGACACAAGATACAAGTCATAATTGCTGCTACAATTGCTGCTACTTTTGGGATGCTTTTACTTTGTCTTGTATTCAGAGTCCGAAGTAACACTAATGAGAAGTCAAACTCTGAAGAATATGTTGAAGGATATGTAACTGAATCAGATCTACCACTGCTTGATTTACTAACAATTACTACTGCCACTGATAACTTCTCATTGTGTAAAAAGATTGGACAAGGTGGTTTTGGACCTGTATATAGGGGAAAATTACCAGCTGGACAAGAAATTGCCGTTAAGAGACTTTCACATTTTTCAGACCAAGGAATAACCGAATGTATAACTGAAGTCCAGTTGATCGCGAAACTTCAGCACCGTAATTTAGTAAAACTTCTTGGTTGCTGCATTCAAGGACAAGAAAAATTGTTAGTTTATGAATACATGGTCAATGGCAGCCTAGACAACTTCATTTTTGATCGAACGAAAAGCGAGTTGCTGGGTTGGTCCCAACGTTTCCTCATAATATATGGAGTTGCTAGGGGACTTTCATATCTTCACCATGATTCTAGACTGAGAATTATCCACAGAGATCTCAAAGCAAGTAACATTTTGCTCGACGAGAACTTGAATCCTAAAATCTCAGATTTTGGAATTGCTAAAGCTTTCGGAGGAGATCAGACTCATGGAAACACAAGAAGAGTTATCGGAACTTAG 1959 0.3951 MLAYILSSSSLAIEIDSIAESQYLTDNMTLVSQGETFELGFFSLGNSPKRYLGIWYKKIPVQTVVWVANRDKAINGTSGRLELNNSTGNLVLKENETIIWNTTIQKQAKNPVLELLDSGNLVVRNDGDSNPDDYLWQSFDHPCDTQLQGMKIGRDLKNSLEWRLTPWKSPDDPSAGDFSYGFLLSDYPELSVMKGTKKQLLIGPWNGIYFSSIPGTTLDLLHEIDYVANEDEILFTFRPNIEAVLTRLVINQSSHIVVHYVWEDTVQSWKQYGFISLDVCAYGVCGPYGYCSVADTNVCQCLEGFTPKSPQSWSSSNWTQGCVRNAPLSCNNVTSTDRFVNYTGLKVPDTQYTKVDKNITLDECKELCLKNCSCMAYTNSNISGNGSGCVMWFGDLIDLKKFQEKGQNLFIRMSGSNSVLQHGHKIQVIIAATIAATFGMLLLCLVFRVRSNTNEKSNSEEYVEGYVTESDLPLLDLLTITTATDNFSLCKKIGQGGFGPVYRGKLPAGQEIAVKRLSHFSDQGITECITEVQLIAKLQHRNLVKLLGCCIQGQEKLLVYEYMVNGSLDNFIFDRTKSELLGWSQRFLIIYGVARGLSYLHHDSRLRIIHRDLKASNILLDENLNPKISDFGIAKAFGGDQTHGNTRRVIGT 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61265g00005 652 Gene3D - 11 139 IPR036426 -
Stsc61265g00005 652 ProSiteProfiles Protein kinase domain profile. 487 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61265g00005 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 563 652 - -
Stsc61265g00005 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 11 139 - -
Stsc61265g00005 652 ProSiteProfiles PAN/Apple domain profile. 330 414 IPR003609 -
Stsc61265g00005 652 Pfam Protein tyrosine and serine/threonine kinase 489 641 IPR001245 GO:0004672|GO:0006468
Stsc61265g00005 652 ProSiteProfiles EGF-like domain profile. 276 311 IPR000742 -
Stsc61265g00005 652 SMART serkin_6 487 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61265g00005 652 SMART ntp_6 334 413 IPR003609 -
Stsc61265g00005 652 Gene3D Phosphorylase Kinase; domain 1 447 562 - -
Stsc61265g00005 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 450 562 - -
Stsc61265g00005 652 Pfam D-mannose binding lectin 63 168 IPR001480 -
Stsc61265g00005 652 Pfam PAN-like domain 333 399 IPR003609 -
Stsc61265g00005 652 Gene3D Hepatocyte Growth Factor 331 411 - -
Stsc61265g00005 652 CDD B_lectin 21 142 IPR001480 -
Stsc61265g00005 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Stsc61265g00005 652 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 642 - -
Stsc61265g00005 652 Pfam S-locus glycoprotein domain 203 309 IPR000858 GO:0048544
Stsc61265g00005 652 ProSiteProfiles Bulb-type lectin domain profile. 15 136 IPR001480 -
Stsc61265g00005 652 SMART blect_4 21 142 IPR001480 -
Stsc61265g00005 652 Gene3D Transferase(Phosphotransferase) domain 1 563 652 - -
Stsc61265g00005 652 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 173 IPR036426 -
Stsc61265g00005 652 SUPERFAMILY Protein kinase-like (PK-like) 463 652 IPR011009 -
Stsc61265g00005 652 CDD PAN_AP_plant 327 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61265g00005 Stsc-Chr61265 17109 19428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61265g00005 427 652 Receptor kinase-like Gene Family AT4G21410 53.556 1.47e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc61265g00005 PK_Tyr_Ser-Thr 9.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61265g00005 - - adu:107463269 854.358