Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61265g00003 ATGAAGTACCTCAGAAGCTGTCATGCATTGGGCATTCTCTCTTTCATAGTGATCCTTGCTTACATACTTTCTTCTTCTCTTGCCACCGAACTTGATTCTATTCGTGTTTCCCAGTCCCTCAGTGATGGTATGACCTTAGTGTCACAAGGTGGAAAATTTGAACTTGGTTTCTTCAGCCCTGGTAATTCACAGAAGCGTTACTTGGGAATTTGGTACAAGAAAATCCCAGTTCACACAGTTGTTTGGGTTGCCAATAGGGTCAACCCCATCAATGATTTCTCAGGAATTTTAACAGTGAACAGCAAAGGCAATCTTATACTCACAGAAAATGGCACTGAGACTACTTTTTGGAGCACAATCTCTCTAAAACAAGCAAAGAATCCAGTGTTGGAGCTCTTGGACAGTGGCAATCTTGTGTTAAGAAATGAAGGGGAATCAAATCCAAAGGACTATTTGTGGCAAAGCTTTGATTATCCATCTGATACATTCTTGCCAAAGATGAAGTTGGGAAGAGACCTCCAAACTGGTTTGGATTGGCGCATAACTGCTTGGAAGAGTCCAAATGATCCATCCCCTGGAGACTTTTCTCTTGGTTTAGTTCTCAGTGATTATCCTGAGTTTTGCATTATGAATGGCACAAAAAAATTCTTCCGGTATGGACCTTGGAATGGCGTTTACTTTAGTGGACACCCAGATCTGTCCTATACCTATATGTTTGAAGTCAGTGTTGTCATAAACAAGGATGAGGTATCCTACAGCACTAACACCAAGATTGATTCTATCATTGCAAGAGGTGCAATAAACGAAACAAGTCATGCTCTTTCACAATATGTATGGGATGAAAATGTACAGAACTGGCAATATTTTGGATCGTCACAACATGATATGTGTGATCATTATGGCCTTTGTGGAGCCAACAGTTATTGCAATGTAACAGAATCACAGCATGTCTGTCAATGCTTAGAAGGGTTCAGTCCAAAGTCACCAGAAGCTTGGAACTCAAACAACACCACACAGGGATGCGTTCGCGACAAACCATTAAGCTGCAATAATAATGTCACAAGCACTGATGGTTTTGTCAAATATAAAGGTTTGAAAGTACCAGATACTCAGCATACTAAGCTGCATGAGAATAGTACTTTAGATGAATGCAAAAATCTGTGTTTGAAGAACTGCTCTTGTATGGCTTATACCAATTCAGACATAAGAGGAGGAGGCAGTGGCTGTGTCATGTGGTTCGGCGATCTAAGTGACATCAAATGGTTTCAATCCGGTGGACAAGATCTATACATCCGACTGCCTGCTTTTGAGTCAGGACTTCAACATCGGAACAAAAAAAAAGTGATCATTACTAGCACCATTGCTGCAATTTGTGCAACACTTCTACTTTGTGTCTATGTTATATACAAAGTCCAAAGGAAAAATGCAGAAAAATCAAAGATAGAAGGATATATAGATGATACAGATCTACCATTGTTTGATCTACAAACAATTACCACTGCGACGCACAAGTTCTCGTTGAATAACAAGATTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAACATTAGCAGATGGACTTGAAATTGCTGTGAAAAGACTCTCACCTAGCTCTGGACAAGGAATGACTGAATTCATAACCGAAGTAAAGCTAATAGCAAAACTTCAGCATCGTAATCTAGTAAAACTTCTTGGTTGCTGCATTCAAGGAGAAGAAATTTTGTTAGTTTATGAATATGTGGTTAATGGTAGCCTTGACAAGTTCGTCTTTGATCAAACAAAAAGTAAGTCGTTGGATTGGCCTCAACGCTTCGGCATAATATATGGAGTTACAAGGGGACTCTTATATCTTCATCAAGATTCAAGATTGAGAATTATTCATAGAGATCTTAAAGCAGGTAACGTATTACTTGATGTCAAATTAAATCCAAAAATATCAGATTTCGGAATGGCCAGGACTTTCGGAGGAGATCAGACTGAAGGAAACACAAATAGAGTCGTTGGGACTTATGGGTATATGGCACCAGAGTATGCTATCGACGGGCTGTATTCTATAAAATCCGATGTCTTCAGCTTTGGCATACTTGTGATGGAGATTATATGCGGGACCAAAAATAGAGCTCTTTGCCATGCAAATAAGACTCTTAATCTCATTGGTTACGCTTGGAGGCTATGGAAAGAGGAGAAGGCTTTAGAATTGATAGATCCAACCATAAAGGAGTCATGTGTAATCTCAGAAGTATTGCGGTGCATCCATGTGAGTCTGTTGTGTGTGCAACAATACCCTGAAGATAGGCCTACAATGGCATCTGTGCTTCTCATGTTAGCAAGTGAGATGGATTTAGTTGACCCTAAAGAGCCGGGCTTCTTTCCCAAGAGGGTTTCTATAGAAGCGAATTCGCACCTGTATCAATCTGAACTGTCTACAAATGATGAATTAACCGTTACCTCATTAGATGGCCGGTGA 2469 0.4006 MKYLRSCHALGILSFIVILAYILSSSLATELDSIRVSQSLSDGMTLVSQGGKFELGFFSPGNSQKRYLGIWYKKIPVHTVVWVANRVNPINDFSGILTVNSKGNLILTENGTETTFWSTISLKQAKNPVLELLDSGNLVLRNEGESNPKDYLWQSFDYPSDTFLPKMKLGRDLQTGLDWRITAWKSPNDPSPGDFSLGLVLSDYPEFCIMNGTKKFFRYGPWNGVYFSGHPDLSYTYMFEVSVVINKDEVSYSTNTKIDSIIARGAINETSHALSQYVWDENVQNWQYFGSSQHDMCDHYGLCGANSYCNVTESQHVCQCLEGFSPKSPEAWNSNNTTQGCVRDKPLSCNNNVTSTDGFVKYKGLKVPDTQHTKLHENSTLDECKNLCLKNCSCMAYTNSDIRGGGSGCVMWFGDLSDIKWFQSGGQDLYIRLPAFESGLQHRNKKKVIITSTIAAICATLLLCVYVIYKVQRKNAEKSKIEGYIDDTDLPLFDLQTITTATHKFSLNNKIGQGGFGPVYKGTLADGLEIAVKRLSPSSGQGMTEFITEVKLIAKLQHRNLVKLLGCCIQGEEILLVYEYVVNGSLDKFVFDQTKSKSLDWPQRFGIIYGVTRGLLYLHQDSRLRIIHRDLKAGNVLLDVKLNPKISDFGMARTFGGDQTEGNTNRVVGTYGYMAPEYAIDGLYSIKSDVFSFGILVMEIICGTKNRALCHANKTLNLIGYAWRLWKEEKALELIDPTIKESCVISEVLRCIHVSLLCVQQYPEDRPTMASVLLMLASEMDLVDPKEPGFFPKRVSIEANSHLYQSELSTNDELTVTSLDGR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61265g00003 822 CDD PAN_AP_plant 346 434 - -
Stsc61265g00003 822 Pfam Protein tyrosine and serine/threonine kinase 506 772 IPR001245 GO:0004672|GO:0006468
Stsc61265g00003 822 SMART ntp_6 354 433 IPR003609 -
Stsc61265g00003 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Stsc61265g00003 822 Pfam PAN-like domain 353 419 IPR003609 -
Stsc61265g00003 822 Pfam D-mannose binding lectin 79 185 IPR001480 -
Stsc61265g00003 822 Gene3D - 26 156 IPR036426 -
Stsc61265g00003 822 Gene3D Phosphorylase Kinase; domain 1 466 580 - -
Stsc61265g00003 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 784 - -
Stsc61265g00003 822 Gene3D Hepatocyte Growth Factor 350 429 - -
Stsc61265g00003 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 767 - -
Stsc61265g00003 822 Pfam S-locus glycoprotein domain 217 328 IPR000858 GO:0048544
Stsc61265g00003 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Stsc61265g00003 822 Gene3D Transferase(Phosphotransferase) domain 1 581 785 - -
Stsc61265g00003 822 ProSiteProfiles PAN/Apple domain profile. 349 434 IPR003609 -
Stsc61265g00003 822 SMART blect_4 37 159 IPR001480 -
Stsc61265g00003 822 SMART serkin_6 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61265g00003 822 CDD STKc_IRAK 511 776 - -
Stsc61265g00003 822 ProSiteProfiles Protein kinase domain profile. 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61265g00003 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 190 IPR036426 -
Stsc61265g00003 822 ProSiteProfiles Bulb-type lectin domain profile. 31 153 IPR001480 -
Stsc61265g00003 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 580 - -
Stsc61265g00003 822 CDD B_lectin 37 159 IPR001480 -
Stsc61265g00003 822 PIRSF SRK 4 822 IPR024171 GO:0004674
Stsc61265g00003 822 ProSiteProfiles EGF-like domain profile. 293 330 IPR000742 -
Stsc61265g00003 822 SUPERFAMILY Protein kinase-like (PK-like) 488 776 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61265g00003 Stsc-Chr61265 10129 13415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61265g00003 448 793 Receptor kinase-like Gene Family AT4G23190 53.390 3.11e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc61265g00003 PK_Tyr_Ser-Thr 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61265g00003 - - aip:110265385 1319.68