Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61262g00008 ATGGATTATGGTAAGAAGTACATTGCTCCAATACCTGGAATCAAAATTTTGGTGGTGGATTGTGATTTAACATCACTAGCATCTGCATCTAAAATGCTTAGAATCCTTGGATATGAAGTTGTGACTGCTACACTAGCTTCTGATGCTTTATCAATTATTGAGAAGAATAAGCTCCACCTTGTGCTCATGGAGATTCATTTGCCTGACATGGAAACTTTTGAACTCATTGACAAAATCAGAGAAAGCTATGGCATGCCATGTTTCATTATGACTGCTGATGAAGATAAAACTTCAATATCAAAAGCACTAAGCAAAGGAGTTAAGCACTATTTCATAAAGCCACTTCTGATTTCTGATTTAAAGGGCCTCTGGCAATTTGCATTATGCAGCACAAAAGTTTCCATACTGAACAAGAATCAACAATGGAAACCACTGAATAATAGGAACAATAATAATATAGGGAAAGAACTTGCTGTACCAGTAGTCCAGAAAAGGAGAAGGATTAAGTGGACTGATCATTTGCATATGAAGTTCATGGAAGCTGTTATATTAGCAGGACCTAGTGGTCCTAAGAAAATACATGAGTATATGAATGTGCCAGGACTCACAAAGCAGCATGTTTCAAGCTATTTACAGAAATATCGCCAATTGTTGAAAGCGCAAGATACCGAGATTCAAAATCAAAAGAAAAGACTATCATTATCATCTGATTCAAAATTTGGATCAAGCCAACCAAATGGTCTCTTTCGTTGCGAGCCAGTGCAAGTTCTTGGTACTCCTGCATATTTTCCTTCCACAGAAATTCCACCTCTTCATGAACCAGCTTTTAGCCAAAACCAGTTATTCTCAGGGACAGTGGTGCAAGGTGGAATGAATGATTATGGTGTGGAATCTTTACAGTTTAGCCAAGTTGAAAGTTTTACCGATGGAAGTGTCTTCGAAGATCAATTATTCTCGAGCGCAGATTTTAGTAGCTGGAGTCAGTTACTTGAACTACAAGACACCTCTTACGACGTGTCCTCTATGGATTATACTGCTGCAAACCAGGAACCGCATTGTTCGATTCCGTTGGATATTGACATGTGTGAACAATTTCCCCCAGAACTTCCTTTTCCTTCATTACCATCAGGAAATGTTGATGATGAAATCTTCAATATTTCAGAGGAAACTGAGAAGGTCTGTGATGAGGATTTAGATACTTGGCTAAAAAGCTTATAG 1218 0.3818 MDYGKKYIAPIPGIKILVVDCDLTSLASASKMLRILGYEVVTATLASDALSIIEKNKLHLVLMEIHLPDMETFELIDKIRESYGMPCFIMTADEDKTSISKALSKGVKHYFIKPLLISDLKGLWQFALCSTKVSILNKNQQWKPLNNRNNNNIGKELAVPVVQKRRRIKWTDHLHMKFMEAVILAGPSGPKKIHEYMNVPGLTKQHVSSYLQKYRQLLKAQDTEIQNQKKRLSLSSDSKFGSSQPNGLFRCEPVQVLGTPAYFPSTEIPPLHEPAFSQNQLFSGTVVQGGMNDYGVESLQFSQVESFTDGSVFEDQLFSSADFSSWSQLLELQDTSYDVSSMDYTAANQEPHCSIPLDIDMCEQFPPELPFPSLPSGNVDDEIFNISEETEKVCDEDLDTWLKSL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61262g00008 405 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 254 IPR045279 GO:0009736
Stsc61262g00008 405 NCBIfam myb-like DNA-binding domain, SHAQKYF class 166 216 IPR006447 GO:0003677
Stsc61262g00008 405 Gene3D - 161 220 - -
Stsc61262g00008 405 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Stsc61262g00008 405 Pfam Response regulator receiver domain 16 121 IPR001789 GO:0000160
Stsc61262g00008 405 SUPERFAMILY CheY-like 12 128 IPR011006 -
Stsc61262g00008 405 SUPERFAMILY Homeodomain-like 163 219 IPR009057 -
Stsc61262g00008 405 Gene3D - 10 133 - -
Stsc61262g00008 405 SMART REC_2 14 124 IPR001789 GO:0000160
Stsc61262g00008 405 Coils Coil 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61262g00008 Stsc-Chr61262 20042 23632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61262g00008 13 268 Response Regulator Gene Family AT2G25180 29.492 1.24e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc61262g00008 Response_reg 1.6e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61262g00008 - - ahf:112728429 515.383