Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61259g00002 ATGGGAAAGAAAAGTGGATTGTTTAGTTATGCAGATGGAGTTGACAAATTGCTATTGTTGTTTGGGACTTTGGGTTGCATAGGAGATGGATTACAAACACCTATCACAATGTTTGTTTTTGGGAGTTTGATTAATGATTATGCAAGTGGTTCTGGAGATTCTGTTCCTAAGCATATTATAGACAAGCACGCTCTCAACTTGCTGTGTATTGCCATTGGGGTTGCTGTGTCTTCTTTTGTTGCCCAAAATCAAGGGGCTAATGGGAGCCAAAATCCTGGCCTTATTTTCTTTTTGTTCTACTTCACTTCCACCCACGCTGTTGTCATCCACACTGCCACCCCTGCCTCCTCCTCCTCTTTTTCTTTTTCCCTTTGTCACCTTCACCTAATGCCACCAACGTTGTTACCATCTTCCTCACGTTCCGTTCCGCCACCACTGGATCTTCAACCAAGGGCATTTGTTGGCAGCGACGATGACAGATTGAAAGTTTTGGAAGGGAATGATCAAGTTCAGGAGCGCCGTTTCCATCTTTCTCTTCCGCTTCTGCGTCCTCTGCCACGCGACGGGAGTTGCCTCCGCGCATCAGTTCTCAAGCAAGATGTTGGCTTCTTTGACAAGCAAACAGACAATGATTCTGCTAAGACCTTCCAAATAATTTCTACCATAACTTCTGATGCCCAAACAATCCAAGACACCATGGCTGAGAAGATACCAAATTGTCTAGTTCACCTCTCAGCATTGTTTTCTAGCTTCATAGTAGGATTCTTCCTCTCATGGAGGCTGGTAATAGCTGCATTTCCATTCTCAATCATGATGATCATGCCAGCAATCATATTTGGCAAGGTAATGAAAGATCTTGGGGGGAAAATGAAGGATGCATATGGAGTAGCAGGCCACATTGCAGAACAAGCTATCTCGTCGGTTCGAACGGTTTATTCGTATGTGGCAGAGAAAGAGACACTGAAGAGGTTTAGCTCTGCTCTTGAGAGGAGTATGGAGCTGGGAATAAAAGTAGGGAGAACAAAGGGTGTTGTGATTGGAAGCTTTGGGTTGCTTTATTGTACTTGGGCATTTCAATCTTGGGTTGGAAGTGTTTTGGTTAGGACTAAAGGTGAAAAAGGTGGACTTGTCTTTGCTGCTGAAATCTGCATGATGTGGGGAGGATTGTAA 1170 0.4419 MGKKSGLFSYADGVDKLLLLFGTLGCIGDGLQTPITMFVFGSLINDYASGSGDSVPKHIIDKHALNLLCIAIGVAVSSFVAQNQGANGSQNPGLIFFLFYFTSTHAVVIHTATPASSSSFSFSLCHLHLMPPTLLPSSSRSVPPPLDLQPRAFVGSDDDRLKVLEGNDQVQERRFHLSLPLLRPLPRDGSCLRASVLKQDVGFFDKQTDNDSAKTFQIISTITSDAQTIQDTMAEKIPNCLVHLSALFSSFIVGFFLSWRLVIAAFPFSIMMIMPAIIFGKVMKDLGGKMKDAYGVAGHIAEQAISSVRTVYSYVAEKETLKRFSSALERSMELGIKVGRTKGVVIGSFGLLYCTWAFQSWVGSVLVRTKGEKGGLVFAAEICMMWGGL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61259g00002 389 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 389 - -
Stsc61259g00002 389 SUPERFAMILY ABC transporter transmembrane region 7 382 IPR036640 GO:0005524|GO:0016020
Stsc61259g00002 389 Pfam ABC transporter transmembrane region 195 369 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc61259g00002 389 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 194 389 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc61259g00002 389 Gene3D ABC transporter type 1, transmembrane domain 190 389 IPR036640 GO:0005524|GO:0016020
Stsc61259g00002 389 Gene3D ABC transporter type 1, transmembrane domain 4 106 IPR036640 GO:0005524|GO:0016020
Stsc61259g00002 389 PANTHER ABC TRANSPORTER B FAMILY 6 389 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61259g00002 Stsc-Chr61259 13479 19795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61259g00002 195 389 Calmodulin-binding Proteins AT2G36910 31.122 2.79e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61259g00002 K05658 - gmx:100804664 315.849