Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61254g00003 ATGGAGGGAGAGAAACACTACAGAGGAATTCGTAGGAGGCCATGGGGCAAGTTCGCTGCTGAGATTAGAGACCCAACGAGAAAAGGGACTCGCATTTGGCTTGGTACCTTTGACACTGCTGAACAAGCTACTAGAGCCTATGACGCTGCTGCTTTCCATTTTCGTGGTCATAGAGCCATTCTCAATTTCCCAAATGACTATGTTGCTGCTGCTTCTTCTTCTGGTAACGAGAGCTTCGTAATGAAATCCGGTTCTTCTGGAACATCACAACTACTACAGCAAGAAGATCATCATCATCAACTTGATCATCACGACACTACTACCACCACTTCTTTTGAGTTGGAATACTTTGACAGCAAGTTGTTGGAAGAACTCCTTCAGGGGCAAGATGCTGCTACACGCACGTAG 408 0.4608 MEGEKHYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQATRAYDAAAFHFRGHRAILNFPNDYVAAASSSGNESFVMKSGSSGTSQLLQQEDHHHQLDHHDTTTTTSFELEYFDSKLLEELLQGQDAATRT 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61254g00003 135 CDD AP2 5 66 IPR001471 GO:0003700|GO:0006355
Stsc61254g00003 135 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
Stsc61254g00003 135 Pfam AP2 domain 6 57 IPR001471 GO:0003700|GO:0006355
Stsc61254g00003 135 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Stsc61254g00003 135 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Stsc61254g00003 135 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Stsc61254g00003 135 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Stsc61254g00003 135 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Stsc61254g00003 135 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Stsc61254g00003 135 MobiDBLite consensus disorder prediction 77 94 - -
Stsc61254g00003 135 MobiDBLite consensus disorder prediction 77 105 - -
Stsc61254g00003 135 PANTHER DNA-BINDING DOMAIN 5 127 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61254g00003 Stsc-Chr61254 20475 20949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61254g00003 6 130 AP2-EREBP Transcription Factor Family AT3G23230 47.200 7.72e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc61254g00003 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61254g00003 - - aip:107647880 190.274