Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61247g00004 ATGCTCAAGAAGTGTTCCTATGAAGTGACTACATGTTGTTTGGCGAGGCACGCTCTAAACTTGCTTCGCGAAAGGAAAGATGGATATGATATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCTTGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGCGAAACATATGGCAGCATGTCTTTAGGAAAAGGATAAACGAGGCAAGAGAATTCGACAGTTTTGAAGGTTTTGAGAGCATTCACCTGATGAGAAACGGATCGGAGCAATGTGATGATGGGAACCTGTTTGCGCTCGAAGACATGACCTCGACTAAGAAAAGAAAAGATGCAGATAACAAACATGATGAAAGGGAACTGATGGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAAAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATCTGATGAATGTTCCTTGGCTAACTAGAGAAAATGTAGCAAGCCACTTGCAGAAGTATCGGCTTTACCTAAGCCGGCTTCAGAAAGAAAACGATCTGAAGTCTTCCTCGATTGGAATGAAACCAGAGTTAGCTTCACCCGATCTAGGGAGTTTTGTTGGAGTTCAAAGCTCAGTGAACAAGAAACAAAATGATGTTTCAATTGACAGCTGCAGTTATTCGGAAGGAACGCCGCAACTTCAGAACATGGAAACCAAAGCTCATGAAGGTAGCAGTGATCCCAATGGAACCATTTCTCCGCCTGCCACTGCAGAAAAGGGAAGAACCATGATCAGCAACATTGTTTCCGACAAGAAGATGAGAAAGAGTTTGCAGATGGGACTTGACCAACCTTTTGACTCTCTTGAGCCGGAAGGAAACCACACAGCAGTGATTGATTGCTCCATTCCAACACAACTCTCTTGGAATAAAGTTCCGGAAAATCAACTCAAAGATCAGAAGCCACTTGTTCAGTTAGAAAGTAACTTAAGCCATAAGTTTCCAATAACTGGTAGGAAGCACCAAATCCAAGTTGATCATCAATCACAGTCAATCGCTTCGATCAGTTCTGCTCCGTCTTTGACAGAGGAGGAGGTCGCCGCGTGCATCGAAACAAAACCTTTGTGTGCAGATTACAAGCGAGAATACAAAAGTTCTGTGAGTTCAATAGGGACTGCAGTTGACAACAACACGTTTCCTATTGAACCCGGAAGTCTTATAATGAATGATCCATCAACACAACCAATTTCAACTACAAATCTGGGATTGAAAACACAAGCATCTAACCTCAACTGCATTTCTGATATGGAGTTTTACCAGAGAAACCTACTTTTGGATGCAGTTTCGGTACCATTGGACGACGATCTGCATTTCAGTTGGCTACATGGGGAATGCTCTAACATTAACTTCAGCCTGCAGAATGTAGGGTATTATGATCCAGGGCTTATTGCAGAAGTTCCAACTCATTACTATGATTCAGCAGATTATTCAGTCATAGATCAAGGTCTATTCATAGCATGA 1647 0.4189 MLKKCSYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRINEAREFDSFEGFESIHLMRNGSEQCDDGNLFALEDMTSTKKRKDADNKHDERELMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSIGMKPELASPDLGSFVGVQSSVNKKQNDVSIDSCSYSEGTPQLQNMETKAHEGSSDPNGTISPPATAEKGRTMISNIVSDKKMRKSLQMGLDQPFDSLEPEGNHTAVIDCSIPTQLSWNKVPENQLKDQKPLVQLESNLSHKFPITGRKHQIQVDHQSQSIASISSAPSLTEEEVAACIETKPLCADYKREYKSSVSSIGTAVDNNTFPIEPGSLIMNDPSTQPISTTNLGLKTQASNLNCISDMEFYQRNLLLDAVSVPLDDDLHFSWLHGECSNINFSLQNVGYYDPGLIAEVPTHYYDSADYSVIDQGLFIA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61247g00004 548 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Stsc61247g00004 548 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 291 IPR045279 GO:0009736
Stsc61247g00004 548 CDD REC_typeB_ARR-like 1 99 - -
Stsc61247g00004 548 Gene3D - 165 224 - -
Stsc61247g00004 548 MobiDBLite consensus disorder prediction 141 160 - -
Stsc61247g00004 548 SMART REC_2 1 95 IPR001789 GO:0000160
Stsc61247g00004 548 Pfam Myb-like DNA-binding domain 167 217 IPR001005 -
Stsc61247g00004 548 MobiDBLite consensus disorder prediction 278 295 - -
Stsc61247g00004 548 MobiDBLite consensus disorder prediction 278 300 - -
Stsc61247g00004 548 Pfam Response regulator receiver domain 2 94 IPR001789 GO:0000160
Stsc61247g00004 548 SUPERFAMILY CheY-like 1 106 IPR011006 -
Stsc61247g00004 548 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 218 IPR006447 GO:0003677
Stsc61247g00004 548 Gene3D - 1 164 - -
Stsc61247g00004 548 FunFam Two-component response regulator 161 224 - -
Stsc61247g00004 548 PIRSF RR_ARR_type-B 1 515 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc61247g00004 548 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61247g00004 Stsc-Chr61247 17343 21371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61247g00004 1 223 Response Regulator Gene Family AT2G25180 57.080 9.29e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc61247g00004 Response_reg 2.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61247g00004 K14491 - gmx:100797421 762.681