Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61245g00002 ATGAGTAGTTCGGAAGATTGCATTGGTTGGGCTGCAAGAGATGCATCTGGACATCTCTCACCATACAAATTCAATCGCAGGTCTGTAGGAGATGATGATGTTTATGTTAAGATCACACACTGTGGTGTTTGTTATGCTGATATCATTTGGACAAGGAATAAATTTGGTGACTCCAAGTACCCTGTTGTGCCAGGACATGAGATTGCAGGCATTGTGACAAAGGTTGGTTCAAATGTCAAGCGTTTCAATGTTGGTGACCATGTTGGAGTTGGGACTTATGTCAACTCGTGCCGCGACTGCGAGTATTGCGAAGATGGACAAGAACATCAATGCATTAAGGGAGCAGTTTATACTTACAATAGAGTTGATTCTGATGCAGCACCTTTGCTCTGTGCCGGAATCACTGTTTATTCGCCGATGATTCGCCACAAGATGAATCAGCAGCCTGGAAAATCTCTGGGAGTGATTGGCCTTGGTGGGCTTGGTCACATGGCTGTTAAATTTGGAAAGGCTTTTGGTTTGAATGTAACAGTTTTCAGCACTAGCATTTCGAAGAAAGATGAGGCCCTCAATCTGCTTGGTGCAGATAACTTTGTGATTTCATCCGATCAAGAGCAAATGAAAGGATTAACAAAGACACTAGACTTTATAATTGACACTGCATCTGGTGATCATCCCTTTGATCCTTACTTGGCACTTCTGAAAACATTTGGAATCCTAGTTGTAGTTGGGGCTGCAAGTGAAATCAAGTTCAGCCCTAGAAGCCTATTTTTTGGATTGAGGAGTATTTCTGGAAGCGCTGTAGGAGGTACAAAAGATATACAAGAGATGATCAATTTATGTGCTGAAAAGGAGATTTATCCAAAGATAGAAGTAATTCCTATTGACTATGCTAATGAAGCTATTGAAAGGGTCATCAAAAGTGACGTTAAGTATCGGTTTGTGATTGATATTGAGAACTCCTTAAAGTAA 972 0.4105 MSSSEDCIGWAARDASGHLSPYKFNRRSVGDDDVYVKITHCGVCYADIIWTRNKFGDSKYPVVPGHEIAGIVTKVGSNVKRFNVGDHVGVGTYVNSCRDCEYCEDGQEHQCIKGAVYTYNRVDSDAAPLLCAGITVYSPMIRHKMNQQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNLLGADNFVISSDQEQMKGLTKTLDFIIDTASGDHPFDPYLALLKTFGILVVVGAASEIKFSPRSLFFGLRSISGSAVGGTKDIQEMINLCAEKEIYPKIEVIPIDYANEAIERVIKSDVKYRFVIDIENSLK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61245g00002 323 FunFam Cinnamyl alcohol dehydrogenase 132 288 - -
Stsc61245g00002 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 125 286 IPR036291 -
Stsc61245g00002 323 Pfam Zinc-binding dehydrogenase 160 282 IPR013149 -
Stsc61245g00002 323 CDD CAD1 9 317 IPR047109 GO:0016616
Stsc61245g00002 323 FunFam Putative cinnamyl alcohol dehydrogenase 6 289 318 - -
Stsc61245g00002 323 SMART PKS_ER_names_mod 17 316 IPR020843 GO:0016491
Stsc61245g00002 323 Gene3D - 132 288 - -
Stsc61245g00002 323 PANTHER ALDEHYDE REDUCTASE 125 321 IPR047109 GO:0016616
Stsc61245g00002 323 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 153 180 IPR029752 -
Stsc61245g00002 323 Pfam Alcohol dehydrogenase GroES-like domain 32 120 IPR013154 -
Stsc61245g00002 323 SUPERFAMILY GroES-like 8 165 IPR011032 -
Stsc61245g00002 323 Gene3D - 125 318 - -
Stsc61245g00002 323 Gene3D - 10 123 - -
Stsc61245g00002 323 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61245g00002 Stsc-Chr61245 21584 23521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61245g00002 1 323 Monolignol Biosynthesis Gene Families AT1G72680 66.106 8.12e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61245g00002 K00083 - gmx:100806165 508.064