Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61237g00002 ATGCCGGCGACGCCGTCGAGCGAAGCAGCGGCCGCATCATACGAAGAAACAGGGGAGAGAAGGAGAAGATACAGGGGAGTCAGACAAAGGCCATGGGGAAAATGGGCGGCAGAGATTCGAGATCCACACAAGGCGGCAAGAGTGTGGCTCGGCACCTTCGACACGGCGGAAGCCGCCGCAAGAGCCTACGACGAAGCCGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAATTTTCCAGAGAATGTTAGAGCAGTTCCACAACCAATTCCTGCCATGGCAGCCACCACCGCCGCCGCCACAAATTTCCGCCGTCCTCCGCCGCAGACATACCAGCCAGCACCACCACCACCACCACAACCACCACAATTGGTTGTTCAACCACAGTTTCATGGAAGCAATGATATGATAAGAGACTATTTGGAATATTCTCTGCTTCTACAGAGTTCTGGTGATTTTCAACAACAACAACAACAAATTATAAATCAACAACCTTCGAATTTGTTACAACAGTTGTACTATAATTCACAAATGGCGGCGCTTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTTATGGCAGCATCTAATTCAGTGTTTTCAGGTTCAGCTCATCAATCTTCCTCTGCTTCACTTCCCCTGTTTCATACTCAGCAAATTGGGTTTTTCCGGCCACCGGGAAACCACCCTCACGGCGGCGATCACGGCGGAGACGGTGCCGGAGGATTAGACTTTCTTCCTTCAACTTGGTCAGATACCAGTGGCTATCCACCACCACCACCTGGTTGA 792 0.5013 MPATPSSEAAAASYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVPQPIPAMAATTAAATNFRRPPPQTYQPAPPPPPQPPQLVVQPQFHGSNDMIRDYLEYSLLLQSSGDFQQQQQQIINQQPSNLLQQLYYNSQMAALQSSSSSSSSSSVMAASNSVFSGSAHQSSSASLPLFHTQQIGFFRPPGNHPHGGDHGGDGAGGLDFLPSTWSDTSGYPPPPPG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61237g00002 263 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Stsc61237g00002 263 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Stsc61237g00002 263 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Stsc61237g00002 263 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Stsc61237g00002 263 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Stsc61237g00002 263 CDD AP2 31 82 IPR001471 GO:0003700|GO:0006355
Stsc61237g00002 263 PANTHER DNA-BINDING DOMAIN 10 193 IPR044808 GO:0003700|GO:0009873
Stsc61237g00002 263 MobiDBLite consensus disorder prediction 224 263 - -
Stsc61237g00002 263 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Stsc61237g00002 263 MobiDBLite consensus disorder prediction 1 30 - -
Stsc61237g00002 263 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Stsc61237g00002 263 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61237g00002 Stsc-Chr61237 3351 4804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61237g00002 15 87 AP2-EREBP Transcription Factor Family AT2G33710 75.342 2.71e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc61237g00002 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61237g00002 - - ahf:112803013 270.781