LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc61237g00001	ATGTGCTTAGTAACAACGGTGGCGCATCAAAGGGGGTCAGGTGAGTTCATCCGGTTCACGGCGCAGCGTGGCGGTGGTGACGGCAGAGATGAGGAACACGGCAGCGGCGGTGGAAGAAGAAGAAGCATATCTTATGAACAAGTAATAGGAAATAATAATAATAATAATAATAAGGAAGGTGATGAGGTGGAAAGAACATCAATGCAAGGTTCAATGGAATTGAGTGACATCATGCTTTCGGTTCTGACAAATTCTTCTTCTTCTTCTTCTTCTCAATCTCAATCTCAATCTCATCAAAGCGGCACCGAATGGTTCGGTTCTTCTTCTAATGCTTCTCATTATCCTATGATGATGACGGATTTTGGACACGTGTCATCTTTGTCTTCTTTCACTTCATCATCCTCATCTTCTTCATTTGTTGGCCAAAAGAGAGGGCGTGAAGAACAACAACAACAACACATGATTATTGGTGCTTCTTCATCTTCATCTTCTTCTTCATCTCAATCTCATCAACATCATCATAACTTGGTTCAACAACCTGGTCATAGATTCTTTAGAACAACCAATATTGGTGACTTCAAGGTTCCACCTTCTCATCAACCAGAATCATCTTCAGGAGCGACAGAAGAAGCTTCTTTCATCACCACGGCGGCCACCACCGCAATGCCGGCGACGCCGTCGAGCGAAGCAGCGGCCGCATCATACGAAGAAACAGGGGAGAGAAGGAGAAGATACAGGGGAGTCAGACAAAGGCCATGGGGAAAATGGGCGGCAGAGATTCGAGATCCACACAAGGCGGCAAGAGTGTGGCTCGGCACCTTCGACACGGCGGAAGCCGCCGCAAGAGCCTACGACGAAGCCGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAATTTTCCAGAGAATGTTAGAGCAGTTCCACAACCAATTCCTGCCATGGCAGCCACCACCGCCGCCGCCACAAATTTCCGCCGTCCTCCGCCGCAGACATACCAGCCAGCACCACCACCACCACCACAACCACCACAATTGGTTGTTCAACCACAGTTTCATGGAAGCAATGATATGATAAGAGACTATTTGGAATATTCTCTGCTTCTACAGAGTTCTGGTTCAGCTCATCAATCTTCCTCTGCTTCACTTCCCCTGTTTCATACTCAGCAAATTGGGTTTTTCCGGCCACCGGGAAACCACCCTCACGGCGGCGATCACGGCGGAGACGGTGCCGGAGGATTAGACTTTCTTCCTTCAACTTGGTCAGATACCAGTGGCTATCCACCACCACCACCTGGTTGA	1299	0.4834	MCLVTTVAHQRGSGEFIRFTAQRGGGDGRDEEHGSGGGRRRSISYEQVIGNNNNNNNKEGDEVERTSMQGSMELSDIMLSVLTNSSSSSSSQSQSQSHQSGTEWFGSSSNASHYPMMMTDFGHVSSLSSFTSSSSSSSFVGQKRGREEQQQQHMIIGASSSSSSSSSQSHQHHHNLVQQPGHRFFRTTNIGDFKVPPSHQPESSSGATEEASFITTAATTAMPATPSSEAAAASYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVPQPIPAMAATTAAATNFRRPPPQTYQPAPPPPPQPPQLVVQPQFHGSNDMIRDYLEYSLLLQSSGSAHQSSSASLPLFHTQQIGFFRPPGNHPHGGDHGGDGAGGLDFLPSTWSDTSGYPPPPPG	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc61237g00001	432	CDD	AP2	252	303	IPR001471	GO:0003700\|GO:0006355
	Stsc61237g00001	432	Gene3D	AP2/ERF domain	243	303	IPR036955	GO:0003700\|GO:0006355
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	132	211	-	-
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	394	432	-	-
	Stsc61237g00001	432	FunFam	Ethylene-responsive transcription factor 2	243	302	-	-
	Stsc61237g00001	432	Pfam	AP2 domain	244	293	IPR001471	GO:0003700\|GO:0006355
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	24	39	-	-
	Stsc61237g00001	432	SUPERFAMILY	DNA-binding domain	244	302	IPR016177	GO:0003677
	Stsc61237g00001	432	PRINTS	Ethylene responsive element binding protein signature	245	256	IPR001471	GO:0003700\|GO:0006355
	Stsc61237g00001	432	PRINTS	Ethylene responsive element binding protein signature	267	283	IPR001471	GO:0003700\|GO:0006355
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	152	185	-	-
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	221	240	-	-
	Stsc61237g00001	432	PANTHER	DNA-BINDING DOMAIN	171	354	IPR044808	GO:0003700\|GO:0009873
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	83	105	-	-
	Stsc61237g00001	432	ProSiteProfiles	AP2/ERF domain profile.	244	301	IPR001471	GO:0003700\|GO:0006355
	Stsc61237g00001	432	SMART	rav1_2	244	307	IPR001471	GO:0003700\|GO:0006355
	Stsc61237g00001	432	MobiDBLite	consensus disorder prediction	19	42	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc61237g00001	Stsc-Chr61237	2358	4804	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc61237g00001	201	308	AP2-EREBP Transcription Factor Family	AT2G33710	50.806	4.37e-35	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Stsc61237g00001		AP2	8.6e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc61237g00001	-		-	ahf:112803013	389.423