Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61236g00002 ATGGGGTTTGGGAATAATAAGAATATTAGTGATAATAATAATAATAATAATGTTATTAAAGCTGGAAGTTTGGATGTGGAAAAGTCAAAGGGAAGAAGGAAGAAGGTAGAGAATGAGAAAGGGTGGTGGCCTAAATTCAGTTTCTTTAGGAGCTGCATACCTTCAAGATCAAAGGTTGTTACCTCCATTAGTGGCACTACTTCTACTCAAAATGCGGAAATCAAATCTGTGTCTGAAAGTTGCACGAAAGAAACGGTTGCTCCTCCGGAGTCCACTATGACAATAATAACAACAACAAGTAATGAAGAAAGTATCCCTTCCACTCCAAAAGTTAGTGAGGAGTTGAAGGTAGCTTCTTGTTTGAGAAAGTTCACATTCAATGGACTTAAGGTGGCAACTCGGAATTTCAGACCGGAGAGTCTTCTTGGCGAGGGAGGGTTCGGTTGCGTGTTCAAGGGTTGGATTGAGGAGAATGGAACTGCGCCTGTTAAACCGGGTACCGGTCTTACCGTTGCCGTCAAGACCCTAAATCACAATGGAAATCAGGGTCACAAAGAATGGCTTGCTGAACTAAACTATCTTGGTGATCTTGTCCATCCTAATCTTGTTAAATTGATTGGTTTCTGTATAGAAGATGACCAGAGATTATTGGTTTACGAGTTTATGCCTCGAGGCAGTTTGGAGAATCACCTCTTTAGAAGGCCCCTACCGCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTTCATGAGGAGGCTCAGAGGCCAATAATCTATCGCGATTTCAAGACATCTAATATCCTATTGGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCCGAGGGGGAAAAGACGCATGTATCAACAAGGGTCATGGGAACATATGGTTATGCTGCTCCGGAGTATGTCATGACCGGACATTTGACATCAAAAAGTGATGTCTACAGTTTCGGAGTGGTGCTTCTTGAAATGCTCACTGGCCGGCGAGCAATCGATAAGAGAAGACCGAACGGAGAACACAACCTGGTGGAGTGGGCTAGACCTGTACTTGGAGATCATAGGATGCTATTCCGGATAGTCGATCCCCGGCTTGAAGGCCACTTCTCCCTGAAAGGTGCACAGAAATCTGCCCAGCTAGCTGCTCGATGCCTTAGCCGTGATCCGAAATCAAGACCTTTGATGAGTGAAGTTGTTCAAACTTTAAAGCCCTTGCCAAACCTCAAGGACATGGCCATTTCTTCTTACCACTTCCAGGTCGCTCGAGTCGACCGTACCTTGTCCATGCCGAATCATAAAAACGGCATCAAAACGCAGTTAGTAGCTTTACCAAAGAAAGGTCAACCTGTAAGGACATTGTCAACTCCAAATGTTCCACATGGTTCTCCATATCTCAATTATAGCAAGTCTCCAAAACCAAAGGAGTAA 1470 0.4395 MGFGNNKNISDNNNNNNVIKAGSLDVEKSKGRRKKVENEKGWWPKFSFFRSCIPSRSKVVTSISGTTSTQNAEIKSVSESCTKETVAPPESTMTIITTTSNEESIPSTPKVSEELKVASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGNQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRAIDKRRPNGEHNLVEWARPVLGDHRMLFRIVDPRLEGHFSLKGAQKSAQLAARCLSRDPKSRPLMSEVVQTLKPLPNLKDMAISSYHFQVARVDRTLSMPNHKNGIKTQLVALPKKGQPVRTLSTPNVPHGSPYLNYSKSPKPKE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61236g00002 489 ProSitePatterns Protein kinases ATP-binding region signature. 142 174 IPR017441 GO:0005524
Stsc61236g00002 489 Gene3D Phosphorylase Kinase; domain 1 120 221 - -
Stsc61236g00002 489 FunFam Serine/threonine-protein kinase BIK1 103 221 - -
Stsc61236g00002 489 CDD STKc_IRAK 142 419 - -
Stsc61236g00002 489 Gene3D Transferase(Phosphotransferase) domain 1 222 436 - -
Stsc61236g00002 489 FunFam Probable serine/threonine-protein kinase PBL8 222 435 - -
Stsc61236g00002 489 MobiDBLite consensus disorder prediction 1 34 - -
Stsc61236g00002 489 MobiDBLite consensus disorder prediction 464 478 - -
Stsc61236g00002 489 SUPERFAMILY Protein kinase-like (PK-like) 111 416 IPR011009 -
Stsc61236g00002 489 MobiDBLite consensus disorder prediction 459 489 - -
Stsc61236g00002 489 Pfam Protein kinase domain 139 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc61236g00002 489 MobiDBLite consensus disorder prediction 1 22 - -
Stsc61236g00002 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Stsc61236g00002 489 PANTHER OS01G0588500 PROTEIN-RELATED 91 419 - -
Stsc61236g00002 489 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61236g00002 Stsc-Chr61236 9101 12628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61236g00002 96 432 Glycoside Hydrolase AT3G07070 51.429 1.04e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc61236g00002 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61236g00002 - - gmx:100499647 818.535