Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61236g00001 ATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCCTTGGCAAACGGAGGAGGGAAAGCACCTGATTGGCAAGACTTTGTTGGGATCATCACACTTTTGCTTATCAATTCAACAATAAGTTTCATAGAGGAGAACAATGCTGGTAATGCTGCCGCCGCTCTCATGGCTCGTCTTGCTCCCAAAGCTAAGATCCTTCGAGACGGGAAATGGGTTGAGGAGGATGCCAGCATCCTTGTTCCGGGTGATATAATTACCATTAAGCTTGGGGATATTATCCCGGCGGATGCTCGTCTCCTTGAAGGTGATCCGTTGAAGATTGATCAGTCTTCACTAACAGGCGAGTCGCTTCCTGTCACGAAAGGCCCCGGCGATAGTGTCTATTCAGGGTCTACATGCAAGCAAGGAGAGATCGAAGCGGTTGTTATTGCCACCGGAGTTCATACCTTCTTCGGCAAGGCTGCTCATCTGGTCGACTCTACAAATCAAGTCGGCCATTTTCAATCGGTCCTAACCGCAATTGGGAACTTCTGCATATGCTCTATTGCTGTGGGAATGATAGTAGAGATCATTGTCATGTATCCGATTCAGCATCGAAAATATCGCCCCGGGATAGACAATCTGCTTGTGCTCCTTATCGGAGGAATTCCGATCGCCATGCCTACTGTTTTGTCAGTGACAATGGCAATTGGATCCCATCGCCTGTCTCAGCAGGGTGCTATTACTAAAAGAATGACAGCAATTGAAGAAATGGCTGGTATGGATGTATTGTGTAGTGACAAAACCGGAACTCTCACGTTGAATAAACTATCAGTTGACAAGAATCTTATTGAGGTTTTTGCTAAAGGAGTTGATGCGGATATGGTGGTTCTCATGGCCGCTCGCGCTTCAAGATTGGAAAACCAAGATGCTATCGATACGGCTATTGTCGGGATGCTGAGTGATCCGAAGGAGGCAAGAGCTGGTATTCGAGAGGTTCATTTCCTTCCGTTCAATCCAACTGACAAGAGGACTGCTCTGACTTACATAGATGACAGCGACGGTAAAATGTATCGTGTCAGCAAAGGTGCACCAGAACAGATCTTGAATCTTGCACATAATAAATCAGAGATTGAGCGTAGAGTTCATTCCGTCATCGATAAGTTTGCTGAGCGAGGATTACGGTCTCTTGCAGTAGCTTTCCAGGAAGTTCCTGAAGGAAGGAAGGAAAGTCCAGGAAGGCCGTGGCAATTTATCGGACTCCTGCCTCTTTTTGATCCGCCTAGACATGATAGTGCTGAGACAATACGCCGGGCGTTGAATCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAGTTAGCTATAGGAAAGGAAACAGGGCGACGTCTAGGAATGGGAACGAACATGTACCCTTCGTCGGCATTATTGGGCCAAAACAAGGATGAATCAATTTCTGCCTTGCCAGTTGATGAACTCATTGAAAAAGCTGATGGATTTGCTGGTGTTTTCCCTGAGCACAAATATGAGATTGTGAAACGTTTACAGGCGAGGAAACACATATGTGGGATGACCGGCGACGGTGTTAATGATGCCCCGGCGCTTAAAAAAGCAGATATTGGAATAGCTGTTGCTGATGCAACTGATGCGGCTCGTAGTGCATCCGACATTGTTCTAACAGAACCAGNNNNNNNNNNTAGTAGAGCAATATTCCAGAGGATGAAGAACTACACGATTTATGCAGTTTCCATCACAATCCGTATCGTGCTTGGCTTCATGCTACTTGCTCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATCCTTAATGATGGCACCATTATGACAATATCTAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAGCTGGCAGAGATATTTACGACCGGAATCATTCTCGGCGGTTATTTGGCTATGATGACAATCATCTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTAGAACATTTGGGGTGTCAAGTCTTCAGAAGAAGGATGTGGATGACTTCAGAATGCTTGCGTCGGCAGTATACCTACAAGTTAGTACAATTAGCCAGGCTCTCATCTTCGTCACACGGTCACGGAGTTGGTCTTATGTCGAGCGTCCCGGCTTGTTTCTTGTGTCGGCTTTTGTCATTGCCCAGCTGATAGCGACACTAATTGCGGTTTATGCAAATTGGAGCTTCGCGGCAATTGAGGGGGTTGGATGGGGTTGGGCTGGTGTTGTGTGGCTTTATAATCTCATCTTTTATATTCCACTCGATTTCATTAAGTTTGTTATTCGATATGCCTTGAGTGGCCGAGCTTGGGATCTTGTTATTGAGCAAAGGATTGCTTTCACAAGGAAAAAGGATTTCGGAAAAGAAGAACGCGAACTTAAATGGGCGCATGCACAGAGAACTCTTCACGGCCTTCATCCACCGGAGACCAAGATGTTCAATGAAAGAACAACTTACACTGAACTGAATCAAATGGCTGAAGAGGCTAAAAGAAGAGCAGAGATTGCAAGATTGAGAGAACTGCATACACTGAAAGGGCATGTTGAGTCAGTGGTTAGGCTGAAGGGGCTTGACATTAATACAATGCAGCAAGCATACACTGTTTGA 2649 0.4519 MWNPLSWVMEAAAIMAIALANGGGKAPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKILRDGKWVEEDASILVPGDIITIKLGDIIPADARLLEGDPLKIDQSSLTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQSVLTAIGNFCICSIAVGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDADMVVLMAARASRLENQDAIDTAIVGMLSDPKEARAGIREVHFLPFNPTDKRTALTYIDDSDGKMYRVSKGAPEQILNLAHNKSEIERRVHSVIDKFAERGLRSLAVAFQEVPEGRKESPGRPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPXXXXSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTIIFFWAAYKTDFFPRTFGVSSLQKKDVDDFRMLASAVYLQVSTISQALIFVTRSRSWSYVERPGLFLVSAFVIAQLIATLIAVYANWSFAAIEGVGWGWAGVVWLYNLIFYIPLDFIKFVIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPETKMFNERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTMQQAYTV 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61236g00001 882 Coils Coil 833 853 - -
Stsc61236g00001 882 FunFam Plasma membrane ATPase 66 150 - -
Stsc61236g00001 882 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Stsc61236g00001 882 Pfam E1-E2 ATPase 64 242 - -
Stsc61236g00001 882 CDD P-type_ATPase_H 1 773 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc61236g00001 882 PANTHER CALCIUM-TRANSPORTING ATPASE 1 815 - -
Stsc61236g00001 882 FunFam ATPase 4 plasma membrane-type 524 747 - -
Stsc61236g00001 882 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Stsc61236g00001 882 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 779 IPR023298 -
Stsc61236g00001 882 FunFam Plasma membrane ATPase 275 423 - -
Stsc61236g00001 882 PRINTS P-type cation-transporting ATPase superfamily signature 523 542 - -
Stsc61236g00001 882 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Stsc61236g00001 882 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Stsc61236g00001 882 PRINTS P-type cation-transporting ATPase superfamily signature 440 450 - -
Stsc61236g00001 882 PRINTS P-type cation-transporting ATPase superfamily signature 546 558 - -
Stsc61236g00001 882 PRINTS P-type cation-transporting ATPase superfamily signature 418 429 - -
Stsc61236g00001 882 FunFam Plasma membrane ATPase 417 569 - -
Stsc61236g00001 882 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 738 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc61236g00001 882 SFLD Haloacid Dehalogenase 245 560 - -
Stsc61236g00001 882 SUPERFAMILY HAD-like 259 560 IPR036412 -
Stsc61236g00001 882 Pfam haloacid dehalogenase-like hydrolase 259 537 - -
Stsc61236g00001 882 Gene3D - 66 150 - -
Stsc61236g00001 882 Gene3D - 28 747 - -
Stsc61236g00001 882 PRINTS H+-transporting ATPase (proton pump) signature 523 539 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc61236g00001 882 PRINTS H+-transporting ATPase (proton pump) signature 380 398 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc61236g00001 882 PRINTS H+-transporting ATPase (proton pump) signature 495 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc61236g00001 882 PRINTS H+-transporting ATPase (proton pump) signature 692 713 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc61236g00001 882 Gene3D - 831 882 - -
Stsc61236g00001 882 SFLD p-type atpase 245 560 IPR044492 -
Stsc61236g00001 882 Gene3D - 275 423 IPR023299 GO:0000166
Stsc61236g00001 882 Gene3D - 260 560 IPR023214 -
Stsc61236g00001 882 NCBIfam HAD-IC family P-type ATPase 35 282 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc61236g00001 882 NCBIfam HAD-IC family P-type ATPase 498 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61236g00001 Stsc-Chr61236 1 5249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61236g00001 1 882 Primary Pumps ATPases AT5G62670 89.314 0.0 1603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61236g00001 K01535 - gmx:100818268 1575.07