Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61227g00003 ATGACAGAAATCGAAGTTCCTGAGTTTTTCCTTTGTCCCATCTCGCTTCAGATAATGAAGGACCCGGTGACAACCGTAACAGGGATAACATACGACAGAGAAAGCATCGAACAATGGCTGCTGCAGCAGAAATCCAAGGATTGTGTCTGTCCCGTTACAAAGCAACCATTGGCAAGGGACTCTGATTTCTTGACCCCAAACCACACCCTTCGGAGGCTCATCCAAGCATGGTGTTCAGCCAACGAATCCAGCGGCGTCGATCGGATTCCCACCCCCAGGCCTCCTCTCGACAAGTCCCAACTTCAGAAACTCCTCAAAGATCTTGATGCTCCTCGCAGCTTTGAAACTTCATTGAAGAAGATGCATGATCTAGCCACTGACAGCGAGAGGAATCGAAACTTCATGGCTGAAGAAGGAGTACCCAAGGCCATCATAGAGTTCATCACAAGGAATTCCAACCAAGGTGAAACCAGATGCTTTGAAGAAGCATTGAGAATTCTTCGGTTACTATGGAGAAGTTCAACATCATCATCGTCATCATCGGCAGCAGCCGGAGGCGGCACAAACATGAAGCCCCTGGTGGGTGAAAACTTGGACTTCATCAAATCGTTGACTTGGATTCTTCAACTCCCAATAATGGACAACGACCTGATCAACATGGTAAACGAAGCAATGCAAATTCTAAAGCTGACCATCGAAATCACCGATTCAACACTCTTGGGAAGCTTAAACCACGAGTTCTTCAAACTAATCGTGAGTACCATCATCACGAGAAACAAACCATCATCAATGTCCCAAACCGCAATCAAATCAGCTTTACACGTCCTCATAGAAACATGCCCCTTGGGAAGAAACAGAATCAAGATCGTGGAATCCGGTGCAGTTACCGAACTCATCGAACTCTCCATTGATAAACCAACGGAAAAGAACCTAACGGAGCTTATATTCACGCTGTTGGCGCAGCTGTGTTCGTGTGCAGAAGGGAGGGAGCAGTTCTTGAACCACCCGGCGGGGATCGCGGTTCTTTCGAAGAGGACGCTGAGGGTTTCGGCTGCGAGCGACGATCGAGCCCTTCATGTGTTGTGGCTGATTTCAAAGTTCTCAGCTTCAAATGAAGTGGTTCAAGAAATGCTGAGGGTTGGGGCTGTGTCAAAGCTATGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAAAAGGCAAGAGATATTCTTAGGTTTCATTCAAAGGCTTGGAATAATTCTCCTTGTATTCAACTTTATTTCTTAACCAGATACCCAAGATGA 1290 0.4643 MTEIEVPEFFLCPISLQIMKDPVTTVTGITYDRESIEQWLLQQKSKDCVCPVTKQPLARDSDFLTPNHTLRRLIQAWCSANESSGVDRIPTPRPPLDKSQLQKLLKDLDAPRSFETSLKKMHDLATDSERNRNFMAEEGVPKAIIEFITRNSNQGETRCFEEALRILRLLWRSSTSSSSSSAAAGGGTNMKPLVGENLDFIKSLTWILQLPIMDNDLINMVNEAMQILKLTIEITDSTLLGSLNHEFFKLIVSTIITRNKPSSMSQTAIKSALHVLIETCPLGRNRIKIVESGAVTELIELSIDKPTEKNLTELIFTLLAQLCSCAEGREQFLNHPAGIAVLSKRTLRVSAASDDRALHVLWLISKFSASNEVVQEMLRVGAVSKLCMVMQADCASYLKEKARDILRFHSKAWNNSPCIQLYFLTRYPR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61227g00003 429 PANTHER WDSAM1 PROTEIN 3 420 IPR045185 GO:0061630
Stsc61227g00003 429 SUPERFAMILY RING/U-box 3 87 - -
Stsc61227g00003 429 ProSiteProfiles U-box domain profile. 5 84 IPR003613 GO:0004842|GO:0016567
Stsc61227g00003 429 Gene3D - 84 416 IPR011989 -
Stsc61227g00003 429 SUPERFAMILY ARM repeat 115 407 IPR016024 -
Stsc61227g00003 429 CDD RING-Ubox_PUB 7 57 IPR045210 -
Stsc61227g00003 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Stsc61227g00003 429 Pfam U-box domain 6 82 IPR003613 GO:0004842|GO:0016567
Stsc61227g00003 429 SMART Ubox_2 9 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61227g00003 Stsc-Chr61227 21620 23427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61227g00003 3 428 U-box Gene Family AT2G35930 40.793 7.59e-107 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61227g00003 - - adu:107461999 640.188