Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61227g00002 ATGGCAACGTACTTTCATGGAAGCAATTCTGAAATGCAATCTTCATCGCCTTCAGCTTCAGCTTCTGCTTCTGCTTCTGCAGATGGCGCCTTGCACACACTTTACCTTATGAACCCAAACTACCACCACGTGCCCTATTCTGACGCGCCGACGCAAAACATGCTTCTTCTCCATCCTAACCACCAATCCCACGCGCTCAATCTTGCCAACTTACCCCACGCGCCACCGCAACCACACCAACAAAACCACCATCTACTCATTCATCGCCTTCCTACCTCCGATGAACACTCCCGCTCCTCTCTCTTCGGACACCACGACATCGCCACCGCCGCTACTGCGGCTTCTTTCCACGGCTTCTCCGGCGCATCTGCAGCTCCGCGCGTGCAGTACAATCTGTGGGGCTCTGTGGTGGACCAGCCTCAGCCGTCGCCGTCCAGCAGCTCGGGAGGCGCCGACATGGGTTTCGGGCGGCCTAGTCATCAGCAGGGCTTGTCGCTCAGCCTGTCCTCACAGCAGCAACAGCAGCAAACAGGTGCCTACAGGTCTCTGTCCGGCGAGGTTGAAGTTGCCGTGGCCGGAGGCGTGGGTAACTCGCCGTCATCAGCGTCGAACGGGATCTCAGGCGTGCAGGGTGTTCTATTGGGATCAAAGTACCTGAAAGCCGCACAGGAGCTTCTCGATGAGGTGGTGAACGTGGGCAATAAGGGAATTTCATCCAAGGAGGAGTTGTTGGCAGGAGCAGAGAAGGTCAAGCCAAATAGGGAATCAAATTGTGGAGCCGGTGAAGGCTCAAGTGGCGGCGGCGGTGGAGAGAACAGTGATGCAGGGAAGCATGTTGCTGAACTGAGCACTGCTCAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTAACCATGCTCGATGAGGTAGAACAAAGGTACCGGCAATACCACCACCAAATGCAAGTGGTGATATCATCGTTTGAGCAAGCGGCGGGGTTCGGGGCGGCGAGGTCGTACACTTCACTAGCCCTAAAGACAATCTCCAAGCAATTCCGGTGCCTTAAGGATGCAATATCTTCACAGATTAGAGCAACCAGCAAGACACTGGGAGAGGATGATTGCTTAGGAGCCAAGGTAGAAGGTTCCAGGCNNNNNNNNNNGCAAAGAGCACTTCAGCAACTCGGAATGATTCAGCCCAATGCTTGGAGGCCACAGAGGGGATTACCTGAACGCGCTGTTTCTATTCTTCGTGCATGGCTTTTTGAGCATTTCCTTCACCCTTATCCCAAGGACTCTGATAAAGTTATGCTAGCAAAGCAAACTGGACTTACTAGGAGCCAGGTGTCTAACTGGTTCATCAATGCAAGGGTTCGGCTATGGAAGCCAATGGTTGAGGAAATGTACATGGAAGAAGTGAAGGAACAAGAAAACAATAACAACAACAATGGTTCAGAGAGATCAAAGGAATCAAGCAAGGAGTTATTAGGGTCAGCATCAAACGCTACTAATAATAATGCAGCAACAGATAATAATAATACTAATAACAATCCAGTTCTTGATCCCATAAAAGTTCTTCATCAATCAAAACAAGAATGCTTCAACAACAACACCTCTCCGACCGGCGGCGAGATCTCGGCGAACTCTTCGTTGTCCACTTCTCCCATGGGTGGAGGAGGAGGAGGAGGATCCCTTCAATCCCACAGCGGTTTCCATCTTGCAGGTTCTTCCTCTGACATGCAAATTAGGAGCCCAAACAAGGCAAGAAACGCTTCAGAAATTATGCATAACTCCCCAAGTAGTATCCTCTCAATGGACATGGAAATGAAGCATCACCAAAACAGCATGAATGGGGATCATAGAGAAGCCAATAATATCACTGGCTATGGAGCTTTCTCAATGGAAGACATTGGAACGAGGTTCAACAATGTCAGTGCTGATCATCATCAATTAGGTTCTTCAAGGTTTCAAGGCAGCAATGGTGTGTCTCTCACCCTGGGACTTCCACACAACGAGAACAATCTTCCTATGTCAGCAACTCAACATGGATTCCTTCCACAGAATATGCATGGTTTGGGAAGAAGACTTGAGATTGGAAGCAATGGGAATGAGTTTTGTGTGATCAACAATCCAAGCTCTTCTCACCCTGGACCTACCTATGAGAGCATTGACATTCAGAACAGAAAGAGGTTTGCTGCACAGTTATTGCATGATTTTGTGGCTTGA 2208 0.4937 MATYFHGSNSEMQSSSPSASASASASADGALHTLYLMNPNYHHVPYSDAPTQNMLLLHPNHQSHALNLANLPHAPPQPHQQNHHLLIHRLPTSDEHSRSSLFGHHDIATAATAASFHGFSGASAAPRVQYNLWGSVVDQPQPSPSSSSGGADMGFGRPSHQQGLSLSLSSQQQQQQTGAYRSLSGEVEVAVAGGVGNSPSSASNGISGVQGVLLGSKYLKAAQELLDEVVNVGNKGISSKEELLAGAEKVKPNRESNCGAGEGSSGGGGGENSDAGKHVAELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQVVISSFEQAAGFGAARSYTSLALKTISKQFRCLKDAISSQIRATSKTLGEDDCLGAKVEGSRXXXXQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEVKEQENNNNNNGSERSKESSKELLGSASNATNNNAATDNNNTNNNPVLDPIKVLHQSKQECFNNNTSPTGGEISANSSLSTSPMGGGGGGGSLQSHSGFHLAGSSSDMQIRSPNKARNASEIMHNSPSSILSMDMEMKHHQNSMNGDHREANNITGYGAFSMEDIGTRFNNVSADHHQLGSSRFQGSNGVSLTLGLPHNENNLPMSATQHGFLPQNMHGLGRRLEIGSNGNEFCVINNPSSSHPGPTYESIDIQNRKRFAAQLLHDFVA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61227g00002 735 SMART HOX_1 397 461 IPR001356 GO:0003677
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 135 152 - -
Stsc61227g00002 735 Gene3D - 400 479 - -
Stsc61227g00002 735 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 129 483 - -
Stsc61227g00002 735 Coils Coil 287 307 - -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 247 284 - -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 523 554 - -
Stsc61227g00002 735 Pfam Associated with HOX 212 354 IPR006563 -
Stsc61227g00002 735 SUPERFAMILY Homeodomain-like 398 464 IPR009057 -
Stsc61227g00002 735 SMART prehox3 207 355 IPR006563 -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 160 181 - -
Stsc61227g00002 735 FunFam BEL1-like homeodomain protein 9 400 462 - -
Stsc61227g00002 735 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Stsc61227g00002 735 CDD homeodomain 397 458 IPR001356 GO:0003677
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 563 583 - -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 466 583 - -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 135 181 - -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 1 23 - -
Stsc61227g00002 735 MobiDBLite consensus disorder prediction 488 516 - -
Stsc61227g00002 735 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61227g00002 Stsc-Chr61227 10364 14647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61227g00002 1 735 Homeobox Transcription Factor Family AT2G35940 41.117 1.51e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc61227g00002 POX 3.9e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61227g00002 - - gmx:100779075 710.679