Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61225g00003 ATGGGAAGCTCAAGAGACATTGCCATTGGACCTGCAGCTGTGGTCACACTCTTGCTTGGAGCTATGATTTCTAAAGAGATTAGAGACCACAAGAGCCATGAATATCTTCGTCTCGCTTTCACTGCTACCTTCTTTGCTGGAATCACTCAGCTCACACTCGGCCTTCTCAGGCTTGGTTTCTTGATTGACTTCTTATCTCATGCTGCCATTGTTGGATTCATGAGTGGAGCTGCCATCATTATCACACTTCAACAGCTTAAAGGCCTCCTTGGCATACCACACTTCACTAAGAAAACTGATATTATTTCTGGAATTGGATCAGTTAAGACTGCTATACTGCACCATGAGTGGAATTTGGAGACAATTATCATTGGAACATCATGCTTGGTCTTCCTTCTTCTTACCAAGTACATTGGTAAAAAGCGTAAGAAACTCTTCTGGGTAGCTGCAATTGCTCCTTTGACTTGTGTTATAGTGTCCACCATTTGTGTCTACATTACCAGGGCTGATGAGAGAGGCGTATTAACTGTTAGATACATCAAGGGAGGTCTCAACTCTGCTTCTGCTAATGAAATTTTCTTTAGAGGAAAATATCTTGTACCAGGTTTTCGGATTGGTGCAGTTGCTGGTATAGTAGCACTCACGGAAGCTGTGTCAATTGGGAGAACATTTGCAGCCATGAAACATTATACACTGGATGGTAACAAGGAAATGGTGGCAATGGGAACCATGAACGTTGTTGGTTCTCTCACATCTTGTATTGTGGCCACAGGATCTTTCTCTCGGTCAGCAGTGAACAACATGGCTGGTTGTGAAACAGCAGCATCAAACATAGTTATGTCCATTGTTATATTGCTAGTACTGACATTGATTACACCTGTGTTTAAGTACACTCCAAGTGCAGTGCTTTCTGCAATCATAATAGCAGCTGCAACAAACTTGGTGAACATCAATGCAGTTATTATGATATGGAAGATTGACAAATTTGACTTTATGGTTTGCATGGGAGCCTTCTTTGGTGTCATCTTCATTAATGTTGAATATTCCCTTCTAATTGCGGTGTCAATATCTGTTGTGAAAATAGTGTTGAGAGTGACAAGGCCAAAGGTTGTAGTACTTGGTAAAATTCCAGGTACTTCTATTTACAGGAACATTGAGCAATATCCTAAGGCATTTCAGATAACTGCCATGCTCATTCTCAGGGTTGATTCTGCTATCTACTTCACTAACTGCAACTTTATCAAGGACAGAATTCTGAGATGGTTGCATTATGAAAATGAAGAGAGGGCAGAATGTGATTTAGCCGAAATAGAGTATCTGGTTGTTGACATGTCAGCCGTTAGTGATATTGATTCAAGTGGCATCCGATCATTGGAAGGGTTATATCATAGCCTTGAGGAAAGACAAGTCCAGCTTGTGTTGGCAAACCTGGGGAAGATTGTAATGGAGAGGTTGCAGACATCAAAGTTAACAGACTTAATTGGAACAAATAAAATATTCCTCTCAGTTGCTGGTGCTGTTATTACTTATGGTCCTAAGAGGGAAGAACTCTAA 1554 0.4093 MGSSRDIAIGPAAVVTLLLGAMISKEIRDHKSHEYLRLAFTATFFAGITQLTLGLLRLGFLIDFLSHAAIVGFMSGAAIIITLQQLKGLLGIPHFTKKTDIISGIGSVKTAILHHEWNLETIIIGTSCLVFLLLTKYIGKKRKKLFWVAAIAPLTCVIVSTICVYITRADERGVLTVRYIKGGLNSASANEIFFRGKYLVPGFRIGAVAGIVALTEAVSIGRTFAAMKHYTLDGNKEMVAMGTMNVVGSLTSCIVATGSFSRSAVNNMAGCETAASNIVMSIVILLVLTLITPVFKYTPSAVLSAIIIAAATNLVNINAVIMIWKIDKFDFMVCMGAFFGVIFINVEYSLLIAVSISVVKIVLRVTRPKVVVLGKIPGTSIYRNIEQYPKAFQITAMLILRVDSAIYFTNCNFIKDRILRWLHYENEERAECDLAEIEYLVVDMSAVSDIDSSGIRSLEGLYHSLEERQVQLVLANLGKIVMERLQTSKLTDLIGTNKIFLSVAGAVITYGPKREEL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61225g00003 517 CDD STAS_SulP_like_sulfate_transporter 388 503 - -
Stsc61225g00003 517 ProSiteProfiles STAS domain profile. 387 510 IPR002645 -
Stsc61225g00003 517 Gene3D STAS domain 367 511 IPR036513 -
Stsc61225g00003 517 PANTHER SULFATE TRANSPORTER 1 508 IPR001902 GO:0016020|GO:0055085
Stsc61225g00003 517 NCBIfam sulfate permease 1 506 IPR001902 GO:0016020|GO:0055085
Stsc61225g00003 517 SUPERFAMILY SpoIIaa-like 393 507 IPR036513 -
Stsc61225g00003 517 Pfam STAS domain 389 506 IPR002645 -
Stsc61225g00003 517 FunFam Sulfate transporter 31 367 512 - -
Stsc61225g00003 517 Pfam Sulfate permease family 1 335 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61225g00003 Stsc-Chr61225 468 4290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61225g00003 1 513 Inorganic Solute Cotransporters AT1G22150 63.035 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61225g00003 K17470 - gmx:100784124 672.544