Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61220g00001 ATGGACCCAAAGAAAATTGCAAGGAGATATATTAGATCTGATTTCTTCATCGACGTTATTGCCACACTACCTCTACCACAGATAGTCATCTGGTTTATTATACCAGCAACAAGAAGCCCTCAGACTGATCATAAGAATAATGCTCTGGCACTGATTGTTTTGCTTCAATATGTTCCGAGATTATATTTAATCTTTCCATTAAGTTCTCAAATAATCAAGGCAACAGGAGTGGTTACAAAGACTGCCTGGGGAGGAGCTGCATATAATCTGCTATTGTATATGTTGGCTAGTCATGTTTTAGGGGCATCTTGGTACCTTTTGTCTGTGGATCGGTATACTACATGCTGGAAATCAATTTGCAAAAGAGAACCCAGTCCTGAGAAATGCTTCAGTTACCTGGACTGCAGTTCTACTAATACTATGATGCGCAGGATATGGGCAAATACTACAAATGTATTTAACAGATGTGATCCCAATAATGATATTGATTTCAAGTTTGGGATATTTGAAAGTGCTGTGAAAAAGCAAGTGGTCTCTTCAAACTTCATCCCAAAATACTTTTATTGTTTGTGGTGGGGGTTGCAGCAATTAAGCTCTTATGGGCAGAACCTAAACACAAGCACTTTTATTGGAGAAACATCCTTTGCTATTCTTATTGCCATCATGGGTCTTGTATTATTTTCCCATTTAATTGGGAACATGCAGACATATTTGCAATCAATCACTATAAGGCTTGAGGAGTGGAGACTTAAGCGAAGAGACACAGAGGAGTGGATGAAGCATCGCCAGCTCCCTGAAGATTTGAGAAGCCGTGTTCGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGAGTTGATGAAGAAACCATTCTACGTGCATTGCCTGCAGATCTTCGCCGTGATATCCAGCGCCGCCTATGCTTAGACCTTGTCCGGCGAGTTCCATTCTTCTCACAGATGGATGATCAACTTCTTGATGCAATATGTGAGCGGCTGGTATCTTCTCTCAGCACTCTAGGTACCTACATTGTTCGTGAAGGAGACCCTGTGACTGAAATGCTCTTCATTATCAGAGGTAGATTGGATAGTTCTACTACAAATGGTGGTCGGACTGGTTTCTTCAACTCAATCATATTGAGGCCTGGGGATTTTTGTGGCGAGGAACTCCTTTCTTGGGCATTACTACCAAGATCAACCACAAACTTACCGTCCTCAACTAGGACTGTTAAAGCCCTAAGCGAGGTGGAAGCTTTTGCTCTTCGAGCTGAGGACCTCAAGTTTGTAGCTAATCAGTTTAGGCGCCTCCACAGTAAGAAGCTGCAGCATACCTTCCGATTTTACTCCCACCACTGGAGAACTTGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGACGGTATAAGAAAAGAATGTCTGCTAAAGACCTCAGTTTGAGGGAATGCATTCCTTTAGATGAGACAGTGACTAGTGATAGAGGAGACAATGACTTGGAATACCCTGCTGGCTCAAATTCATCTCAAGCTAAATTGAACCTTGGGGTCACAATACTTGCTTCAAGGTTCGCCACCAACACAAGAAGAGGTGCTTTGAAGATAAAAGATGACCTGCCTAAGTTACCGAAACCTGAAGAACCTGACTTTTCTGCCGAAGCTGACGATTAG 1662 0.426 MDPKKIARRYIRSDFFIDVIATLPLPQIVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWGGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSICKREPSPEKCFSYLDCSSTNTMMRRIWANTTNVFNRCDPNNDIDFKFGIFESAVKKQVVSSNFIPKYFYCLWWGLQQLSSYGQNLNTSTFIGETSFAILIAIMGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMKHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRRLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPRSTTNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLSLRECIPLDETVTSDRGDNDLEYPAGSNSSQAKLNLGVTILASRFATNTRRGALKIKDDLPKLPKPEEPDFSAEADD 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61220g00001 553 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 547 - -
Stsc61220g00001 553 SMART cnmp_10 317 448 IPR000595 -
Stsc61220g00001 553 FunFam Cyclic nucleotide-gated ion channel 1 244 308 - -
Stsc61220g00001 553 Pfam Ion transport protein 5 243 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc61220g00001 553 FunFam Cyclic nucleotide-gated ion channel 1 315 433 - -
Stsc61220g00001 553 SUPERFAMILY Voltage-gated potassium channels 6 239 - -
Stsc61220g00001 553 MobiDBLite consensus disorder prediction 533 553 - -
Stsc61220g00001 553 CDD CAP_ED 317 448 IPR000595 -
Stsc61220g00001 553 Gene3D Jelly Rolls 315 435 IPR014710 -
Stsc61220g00001 553 ProSiteProfiles cAMP/cGMP binding motif profile. 317 401 IPR000595 -
Stsc61220g00001 553 Gene3D - 2 242 - -
Stsc61220g00001 553 Gene3D Helix hairpin bin 245 308 - -
Stsc61220g00001 553 Pfam Cyclic nucleotide-binding domain 341 428 IPR000595 -
Stsc61220g00001 553 SUPERFAMILY cAMP-binding domain-like 247 439 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61220g00001 Stsc-Chr61220 16504 24060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61220g00001 1 553 Ion Channels AT4G30360 74.327 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61220g00001 K05391 - gmx:100808425 989.949