Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61211g00003 ATGGAATCTTTTGATCAAAGAAACAATAGTGGAGTATTTGGCTCTTCGGCTGCAGTTCCGAGACCACCACCGAATAATAATAGATTGAATGCTTTTAACCAGATGGGTGCCGGTGGCTCCGAGAATCCGAAGCCGGGGATTGGTATGCCGCCGTCGCACCCTAGTACCAATTTGCCATATTCTCAGTATATAGCTTCTCAAAACCAGCACCATTTAGGTTCTCAGAGACTGCGTTCGCCGAGCTTGAGCCCGGGGTCATCATCATCTTCATCACATTCTAGGTCTTTGTCCCAGCCCTCATTCTTTTCCCTTGATTCCTTGCCACCATTGAGCCCGTTGACTTATCGAGACCCTTCTGCTTCTCCGGGGGCAGCTGCAACCTCCTTTGGTGATTCGGTCTCAATGGACGTGTCTATGGAGGAAAACTTAGGTTCCACTCATGCTGCGCCCTCTGTGACTATCAACAGAGGTCATGCTAGTCATAGTCTTCCTCCTCGCAAGGGGCACAGGCGCAGCAATAGTGATTCCCCTTTAGGAATTTCTGGTCTTGTTCAATCTTATTCTCAGTCGATTCCTACTAAGAATGTGAGCGACCGGGACAATTCAGTCTCTAAAGGTGAAAACACTGGTTTTGAGAAGCCAATTCAGTTAGTTTTAAAGGAGCCGAATAAGGATATGGACCACTTTGATGGCTTTAATGGAGAAGCTATGGGCAAGAAAGAGGATTGCATAGATGATTTATTTAATGCGTACATGAATTTGGATAACATACATAATATGAACTTTCCTGGCATGGAAGATAAGGATTTGGATAGCAGAACTAGCGGTTCAAAGACAGTTGAAAGTAGTGACAATGAAGTAGAAAGTCATGCGAATGGAAAGACAACTTCTGCTCAGGGAGCAACTTCGAGCTATAAAGAAGAACGGAAGGAGGGTATCAAGAGGGGTTCTAGTGGTGACATTGCACCTGTAGGCCGACACCGGCGAAGCTTCTCATTGGATAGTTCCATTGGGAATTTTCAGCTTGAAGATGAATCACCTAAGCTGCCTCCATTACAAAATCGATATGGTCAACACTCGCCTAGCAATTCAATGGATGGTAAAACTTCTGAGACCAGTATGGAGTTTGTAAAGCGTGAATTTAGCTCAGATGAATTAAAGAAAATAATGGAAAGTGACAAGCTCACTGAGATTGCCATGGCTGATCCAAAGCGTGCAAAACGGATATTGGCTAATCGTGTCTCAGCTGCTCGGTCAAAGGAGCGGAAAACACGATATATTTCAGAACTGGAGCATAAGGTGCAGACTCTANNNNNNNNNNAACCTCATTGTCTACTCAATTTACTAAACTACAGATGGATAATTCAGAGCTTAAAAGTTTGA 1383 0.4396 MESFDQRNNSGVFGSSAAVPRPPPNNNRLNAFNQMGAGGSENPKPGIGMPPSHPSTNLPYSQYIASQNQHHLGSQRLRSPSLSPGSSSSSSHSRSLSQPSFFSLDSLPPLSPLTYRDPSASPGAAATSFGDSVSMDVSMEENLGSTHAAPSVTINRGHASHSLPPRKGHRRSNSDSPLGISGLVQSYSQSIPTKNVSDRDNSVSKGENTGFEKPIQLVLKEPNKDMDHFDGFNGEAMGKKEDCIDDLFNAYMNLDNIHNMNFPGMEDKDLDSRTSGSKTVESSDNEVESHANGKTTSAQGATSSYKEERKEGIKRGSSGDIAPVGRHRRSFSLDSSIGNFQLEDESPKLPPLQNRYGQHSPSNSMDGKTSETSMEFVKREFSSDELKKIMESDKLTEIAMADPKRAKRILANRVSAARSKERKTRYISELEHKVQTLXXXXPHCLLNLLNYRWIIQSLKV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 1 37 - -
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 125 158 - -
Stsc61211g00003 460 Gene3D - 403 441 - -
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 54 107 - -
Stsc61211g00003 460 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 89 437 - -
Stsc61211g00003 460 SMART brlzneu 400 460 IPR004827 GO:0003700|GO:0006355
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 289 303 - -
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 1 213 - -
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 258 369 - -
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 174 209 - -
Stsc61211g00003 460 MobiDBLite consensus disorder prediction 353 369 - -
Stsc61211g00003 460 CDD bZIP_plant_RF2 405 437 IPR044759 GO:0003700|GO:0006355
Stsc61211g00003 460 SUPERFAMILY Leucine zipper domain 404 442 IPR046347 GO:0003700|GO:0006355
Stsc61211g00003 460 Pfam bZIP transcription factor 404 438 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61211g00003 Stsc-Chr61211 9084 12913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61211g00003 47 437 bZIP Transcription Factor Family AT4G38900 42.067 9.10e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc61211g00003 bZIP_1 5.1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61211g00003 - - gmx:100810841 500.745