LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc61210g00001	ATGCCACTCTCACAACTCATTATTTCCTTACAAATTCATCCTTCAAAGACCTCCTTCATCCAGCGCTTGATGAGAATCTTGATCAACTCCGGCTTCATCGCCACCAAGAATAATATCAACAATGATGATAACGAAGTTGAGTATTTACTAACTGATTCATCAATGTTGCTGCTCAAGAACAACCCTTTAAGTATGACACCTTTCGTCCTCTTGTCTCTTGATCCAGTTATGATAAAGCCATGGCATCAATTGTCTACCTGGCTGATGAAGAATGATTGCGATGGAGATCGCGATCGAATGCCGTTCGAAACCGAACATGGGATCATTCTTTGGGATTATGCTAGCCGTGTGCCTAAGCTTAATCTCTTGTTCAATGATGTCACGGCGAGAGATGCTCAGTTAGTGAGCAGTTTGTTGCTTGGAGATGAAAAGTGGAAGGAAGTGTTTGAGGGATTGGAATCGTTGGTTGATGTTGGTGGAGGAACTGGGACTATGACAATGGCAATTGCCAAATCATTTCCAAAGATGAGTTGTGTTGTGTTTGATCTTCCACATGTGGTTGCTGGCTTCCAAGGAAACGATGAGAACCTAAAATATGTTGGAGGGAACATGTTTGAAGCTATTCCTCCATGTGACGCCATTTTGTTGAAGTGGATTCTGCATGATTGGAACGACAAAGAATGCATGAACATACTGATGAAATGTAAGGAAGCAATCACAAAGAAGGGCAAAAAGGGGAAAGTGATTATCATAGACATGGTGGTCGATGATGAGGACAATAATAATAAGAAAGATGATGAAGTTGAAACACAACTCTTCTTTGACATGCTGATGATGGTGGAAGTCGGTGGAAAGGAGAGAAGTAAAAAAGAATCGATCCATTTGACCAATGATGCCACCTTCCGCCACACTGCCAATAGCGGACACCCATGTCCCGAACCATTGAAGTAG	951	0.4217	MPLSQLIISLQIHPSKTSFIQRLMRILINSGFIATKNNINNDDNEVEYLLTDSSMLLLKNNPLSMTPFVLLSLDPVMIKPWHQLSTWLMKNDCDGDRDRMPFETEHGIILWDYASRVPKLNLLFNDVTARDAQLVSSLLLGDEKWKEVFEGLESLVDVGGGTGTMTMAIAKSFPKMSCVVFDLPHVVAGFQGNDENLKYVGGNMFEAIPPCDAILLKWILHDWNDKECMNILMKCKEAITKKGKKGKVIIIDMVVDDEDNNNKKDDEVETQLFFDMLMMVEVGGKERSKKESIHLTNDATFRHTANSGHPCPEPLK	316

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc61210g00001	316	SUPERFAMILY	"Winged helix" DNA-binding domain	1	62	IPR036390	-
	Stsc61210g00001	316	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	62	303	IPR029063	-
	Stsc61210g00001	316	PIRSF	O-mtase	1	309	IPR016461	GO:0008168
	Stsc61210g00001	316	Gene3D	-	1	57	IPR036388	-
	Stsc61210g00001	316	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	1	316	IPR016461	GO:0008168
	Stsc61210g00001	316	PANTHER	O-METHYLTRANSFERASE	3	301	IPR016461	GO:0008168
	Stsc61210g00001	316	Gene3D	Vaccinia Virus protein VP39	58	311	IPR029063	-
	Stsc61210g00001	316	FunFam	O-methyltransferase ZRP4	59	306	-	-
	Stsc61210g00001	316	Pfam	O-methyltransferase domain	81	302	IPR001077	GO:0008171

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc61210g00001	Stsc-Chr61210	8135	11930	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc61210g00001	13	302	Monolignol Biosynthesis Gene Families	AT5G54160	30.034	1.50e-38	138

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc61210g00001	-		-	gmx:100781008	332.798

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