Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61208g00001 ATGATGTGGGAATGGGAAGACTTAAACGACGCCGTTCCGCAGAACGACCAACCTGACCCCAATTCCTACCTCAACTTCGATCTCTTCTCTGCTCTCTCTAAGCCCAAGGATTATTATAAGATATTGGAAGTGGATTATGATGCTACGGACGATGCTATTCGTTCTAATTACATACGTCTAGCTTTGAAATGGCACCCGGACAAGCAGAAAAACCAAGATGCTGCCACCACGCGGTTCCAAGAGATAAATGAGGCTTATCAGGTTTTGAGTGATCCTGTCAAGAGGAGAGAATACGACAGGAACGGGATGCTTTACGCCTATGATTATGATATCATTGATTATCTTAACCGTTACAAGGGCCTTATATTGACTTGCAACGGTCTGGGAATGAAGCATTCTATATGGTAA 408 0.4363 MMWEWEDLNDAVPQNDQPDPNSYLNFDLFSALSKPKDYYKILEVDYDATDDAIRSNYIRLALKWHPDKQKNQDAATTRFQEINEAYQVLSDPVKRREYDRNGMLYAYDYDIIDYLNRYKGLILTCNGLGMKHSIW 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61208g00001 135 SUPERFAMILY Chaperone J-domain 33 122 IPR036869 -
Stsc61208g00001 135 FunFam Chaperone protein DNAj, putative 29 116 - -
Stsc61208g00001 135 SMART dnaj_3 36 94 IPR001623 -
Stsc61208g00001 135 Gene3D DnaJ domain 29 111 IPR036869 -
Stsc61208g00001 135 ProSitePatterns Nt-dnaJ domain signature. 79 98 IPR018253 -
Stsc61208g00001 135 ProSiteProfiles dnaJ domain profile. 37 102 IPR001623 -
Stsc61208g00001 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 135 - -
Stsc61208g00001 135 Pfam DnaJ domain 37 99 IPR001623 -
Stsc61208g00001 135 PRINTS DnaJ domain signature 57 72 IPR001623 -
Stsc61208g00001 135 PRINTS DnaJ domain signature 74 94 IPR001623 -
Stsc61208g00001 135 PRINTS DnaJ domain signature 39 57 IPR001623 -
Stsc61208g00001 135 CDD DnaJ 37 91 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61208g00001 Stsc-Chr61208 1003 4871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61208g00001 30 106 C2H2 Transcription Factor Family AT1G74250 41.667 2.84e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61208g00001 - - var:108338470 243.432