Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc611g00007 ATGGCTTCAGCTTTGTCCAAAGAAATGGGAATGATGGAAGCTCAAGTGAAGCGATGGAAGGATGCAGCTCATGAGGCCGTATCATTACGCGAGAAAGCTCATTCACTGAGAGCCATGTTGAGTGGGAAGACAAGTGAAGTTAGCAGCCTTGCAAACAAATGTTCTGAACAGGATTCGGAAATCAAATCCTTAAAAACATTGATTGAAAATCTACAGAAGGAGAAACTAGAGTTAGAATTTGTTCTGGATATGTATGGACAAGAGAATTACGATAAAAGTACTCTGGAAGAAATTAAAGAATCTGAAAATAAAGCCCACTCTCAAGCAGAAATGCTGAAAAATGCTTTAGATGAACATAGTCTGGAGTTAAGAGTAAAAGCCGCTAATGAAGCTGAAGAAGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAAATAGAGGACTTAAGGGCCAAGCTAGATGCAGCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTGAAAGAGGCTGAGGCAGAGGCATATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATTTGATGAAGCAGGTGACTGAGAGGGATGACTATAATATCAAGCTTGTGTCAGAAAGTGTGAAGACAAAACAAGTACACAGTTCTTTATTGGCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAACACTTTAATTGATGCCTCAAAAATGAGGATTGCACACGTTGAGGAACAGATGAAGGCCGTTCTCTTGGAAGGCATTAAATGTAATCAGGAGGAGAAAAACCTTCATGTCGCTCTGGAATTTGCCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTAAAATGGCTGAAGTCTGCTCTTTCCTCTTCGGAGAAAGAATATGACCAAATACAGAAAGATGTGGCAGCAGTTGAAATGGAATTAGAAAGTGAAAGGAGTGCGCGGATGAAGCTTGAGGAAGAACTCAGGGAAGTGAACAGGCAAATTGCCGAGCTGAGTTCTGAAACAGGTGAAACCGCAATACAAAAGCTCGAAGCAGAGATAAAGATCTGCAAGAACATGATCAAGTGCACCGTCTGTTCCGATCGGCCAAAGGAGGTCGTGATTGTGAAGTGCTATCATCTGTTTTGCAACCCATGCATACAAAGAAATCTAGAGCTGAGGCACCGCAAGTGTCCTGCATGTGGAACAGCTTTTGGACAAAGTGATGTTCGCTTTGTTAAAATATGA 1269 0.4184 MASALSKEMGMMEAQVKRWKDAAHEAVSLREKAHSLRAMLSGKTSEVSSLANKCSEQDSEIKSLKTLIENLQKEKLELEFVLDMYGQENYDKSTLEEIKESENKAHSQAEMLKNALDEHSLELRVKAANEAEEACEQRLAAAEAEIEDLRAKLDAAERDILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQHLMKQVTERDDYNIKLVSESVKTKQVHSSLLAEKQALAKQLQQINTLIDASKMRIAHVEEQMKAVLLEGIKCNQEEKNLHVALEFAKWELADAEKELKWLKSALSSSEKEYDQIQKDVAAVEMELESERSARMKLEEELREVNRQIAELSSETGETAIQKLEAEIKICKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc611g00007 422 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Stsc611g00007 422 SUPERFAMILY RING/U-box 369 413 - -
Stsc611g00007 422 ProSiteProfiles Zinc finger RING-type profile. 370 408 IPR001841 -
Stsc611g00007 422 SMART ring_2 370 408 IPR001841 -
Stsc611g00007 422 Coils Coil 279 348 - -
Stsc611g00007 422 Coils Coil 125 180 - -
Stsc611g00007 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 421 IPR013083 -
Stsc611g00007 422 CDD RING-HC_Bre1-like 362 418 - -
Stsc611g00007 422 PANTHER RING FINGER PROTEIN-RELATED 1 422 IPR013956 GO:0004842|GO:0010390
Stsc611g00007 422 Coils Coil 54 88 - -
Stsc611g00007 422 Coils Coil 95 118 - -
Stsc611g00007 422 Pfam Zinc finger, C3HC4 type (RING finger) 369 411 - -
Stsc611g00007 422 SUPERFAMILY Tropomyosin 232 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc611g00007 Stsc-Chr611 22193 26474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc611g00007 354 417 RAD5 or RAD16-like Gene Family AT5G05130 32.812 2.36e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc611g00007 K10696 - gmx:100796610 665.996