Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc611g00001 ATGCTTCAAACAAATGTTGGGTATTCCACATTCACCGAAATGATTCTCCACCTCCATCAAAATCGCTCCTTTCTCTTCCTAAACCCTAAACTACTACCACCACTACCATTTCAACCACAAACCCGGTTACGTTTTCCCTTCAAAGCTCGAACCTTTCGAGTTTTTAAGTCCACCCATGTCGCTACTTTGAACAATTTCTCTCCTGTGGAGTCTAACTCTAAACGCGTGCCTCGTCTTGTGAAAATTGAAGCACAGCGTGCTATTATGGATTACTTGCATTCAACACGTGGCTACAGCTTCTTGGATGCTGAGTACATCAGTAAGAATTGCCCCAACTTCATTAAATCTTTGGTTGCTAAAGTTGATTTTTTTGTTGGTGGAAATAATGATGATGTTGCTCATTCGTTGAAGAAGTTCCTGAGGTACAACCCCATTAATGAGTTTGAACCATTCTTTGAGAGCATAGGGATTAGCCCATCTGAGTTGCAAGATTTTCTACCTAGTGGCATGTTTTTCTTAGCTGATGATTCTGCCTTGGTTGATAATTTCCATGTTCTGTGTAACTATGGTGTACCTAGGAACAGGATGGGAGAGATTTATAAGGAAGCAAAAGAGGTTTTTGGGTACCCTAAGGGATTCTTGTTGGAGAAATTTAGAAGGTATGAAGAATTAGGGTTGAGTAAATCACTTATCATCAAGCTTAGTATGTGTTGTCCTTCAATTTTGGTTGGTGGCCGTCATTGTGAATTTGTGGTGGTTCTTGATTGGTTGAAGAGAATTGGGATTGAAGATGATTGGATTGTTAGTTACATGTCTTGTTCAAGGACATATAGTTGGAAGAAAATGCTTGATGCTATTCAACTTCTAGATGAAGTTGGTTATTCTGAGGAACAAATGCACAATTTGTTCAAGGCAAATCCTAAATTATTATTGGAAGGTTTTGGGAAGAAGCTGCAACTGTTTTTGGTTAGATCACATAAGTTAGGTGTTAAGGTGAATGTTATGTATTCCTATTTTATGGAGTATCCTCATATATTGTTAAACAAGTGTGCAAAAAATTTGTTGAGAGTGATTGATATTTTGTGTGCTTTTGGAATGGAAACAGATGAAATTGCACGAATTTTGTCTAATTACATGCATCTATTCAGCACATATTCCTTCAAAGGTCCAAGAACTGTTTGCTCGGAGTTGAAAGTTGAGAAAGCTGAATTGCTCCGAATCGTAAAGGATGATCCACTGAAACTTATTAGTGTGGCTTCAAGTTCGAAAAATAAGAGCCCCAAACAGATATCCGTTTATGATCCGCGCAGACATTTGGAAAAGATCACTTTCCTGTTCAAACTGGGGTATGCAGAGAACTCGGAGGAGATGGCGAGGGCATTGAAAGTGATCCGAGGGAGAGGTGATCTGTTACAGGAGAGGTTTGATTGTTTGGTAGAAGCTGGTTTGGACTATAACAGTGTGATTGGAATAATAAAAAGAGCTCCTACTATTCTGAACCAAAAGAAAGATGTAATTGAAGAGAAGATTCATTTTGCCAGAGATGTCTTAGGCTATCCCTTAGAAAGCTTTGTGGCATTCCCAACATACTTTTGTTATGATTTGGAGAAGATTAGTCAGAGATTTTCAATGTATGCATGGTTGAAGGAGAGGAAAGTAGTGAATCCTTCCTTAACCTTGACTACCATAGTTTCATCCAATGATAAACGGTTTGAAAAATATTTTGTAAATGTTCATCCTCAAGGTCCATCCATTTGGGAAGG 1763 0.3851 MLQTNVGYSTFTEMILHLHQNRSFLFLNPKLLPPLPFQPQTRLRFPFKARTFRVFKSTHVATLNNFSPVESNSKRVPRLVKIEAQRAIMDYLHSTRGYSFLDAEYISKNCPNFIKSLVAKVDFFVGGNNDDVAHSLKKFLRYNPINEFEPFFESIGISPSELQDFLPSGMFFLADDSALVDNFHVLCNYGVPRNRMGEIYKEAKEVFGYPKGFLLEKFRRYEELGLSKSLIIKLSMCCPSILVGGRHCEFVVVLDWLKRIGIEDDWIVSYMSCSRTYSWKKMLDAIQLLDEVGYSEEQMHNLFKANPKLLLEGFGKKLQLFLVRSHKLGVKVNVMYSYFMEYPHILLNKCAKNLLRVIDILCAFGMETDEIARILSNYMHLFSTYSFKGPRTVCSELKVEKAELLRIVKDDPLKLISVASSSKNKSPKQISVYDPRRHLEKITFLFKLGYAENSEEMARALKVIRGRGDLLQERFDCLVEAGLDYNSVIGIIKRAPTILNQKKDVIEEKIHFARDVLGYPLESFVAFPTYFCYDLEKISQRFSMYAWLKERKVVNPSLTLTTIVSSNDKRFEKYFVNVHPQGPSIWEG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc611g00001 588 Gene3D Transcription termination factor 3, mitochondrial 320 582 IPR038538 -
Stsc611g00001 588 Pfam mTERF 286 572 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 Pfam mTERF 276 381 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 PANTHER CGI-12 PROTEIN-RELATED 281 578 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 SMART mt_12 489 520 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 SMART mt_12 521 554 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 SMART mt_12 197 227 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 SMART mt_12 336 367 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Stsc611g00001 588 Gene3D Transcription termination factor 3, mitochondrial 143 319 IPR038538 -
Stsc611g00001 588 FunFam mTERF family protein 126 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc611g00001 Stsc-Chr611 510 2272 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc611g00001 mTERF 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc611g00001 - - aip:107606700 931.398