Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61199g00001 ATGGAGAATTATGATCACAATTCTAGTTGTTCTTTATTTCTAGACCCTTCTCAAACATTGTTGCCTCATGTCTTTGATTGTGATGATTCTCTTCATCATCACTTTCATGGTGAGTTTCATCCATGGCCGGCACCGGTCGAAATGGTGGCCGGAGACAGGGCTGTTATGGCTTCCAAGAGCCATAGTCAGGCCGAGAAGCGGCGGAGGGATCGGATCAATGCACAGCTTACAAGTCTCAGGAAGCTAATTCCCAAATCTGATAAGATGGATAAGGCAGCTTTACTAGGAAGCGTGATAGAGCGAGTGAAGGATCTAAAGAGAAATGCAATGGAAGTTAGCAAATCCACAGCGCTTCCAACCGAAACCGATGAAATAACAATCGAGTATGACCTTAATGCGCGCGATGAGAGCCTAAAATTGAAGGACAATGTTGTGATTAAGGCATCGGTTTGCTGCGAGGATCGGCCGGAGCTCTTCTCGGAACTCATCCATGTTCTCAAAGGGTTAAGGCTCACGGCAGTTAAAGCTGAAATAGCAAGTGTTGGAGGAAGAATCAAAGGCACATTGTTGCTTTGTTCTAAGGATAGTGAAAAGGGTGTTTGCCTTACTACTCTCAAGCATTCCCTAAAATCAGTTGTGACAAAAATGGCCTCATCTTCCGTTGCAACAAATTGCCCTACTAGAAGTAAGAGGCAAAGGTTCTTCTTACCCTCTCATTTTATATAG 726 0.4421 MENYDHNSSCSLFLDPSQTLLPHVFDCDDSLHHHFHGEFHPWPAPVEMVAGDRAVMASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKMDKAALLGSVIERVKDLKRNAMEVSKSTALPTETDEITIEYDLNARDESLKLKDNVVIKASVCCEDRPELFSELIHVLKGLRLTAVKAEIASVGGRIKGTLLLCSKDSEKGVCLTTLKHSLKSVVTKMASSSVATNCPTRSKRQRFFLPSHFI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61199g00001 241 PANTHER TRANSCRIPTION FACTOR BHLH30 35 237 IPR045847 GO:0003700|GO:0006355
Stsc61199g00001 241 CDD bHLH_AtAIG1_like 52 127 - -
Stsc61199g00001 241 Pfam Helix-loop-helix DNA-binding domain 59 105 IPR011598 GO:0046983
Stsc61199g00001 241 Gene3D - 53 115 IPR036638 GO:0046983
Stsc61199g00001 241 CDD ACT_UUR-ACR-like 149 184 - -
Stsc61199g00001 241 SMART finulus 62 111 IPR011598 GO:0046983
Stsc61199g00001 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Stsc61199g00001 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 108 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61199g00001 Stsc-Chr61199 5824 6774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61199g00001 35 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.418 6.69e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc61199g00001 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61199g00001 - - adu:107469423 392.119