Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61196g00003 ATGGCGGTGATCCAACTTATCTCAACCAGCACAATCCAAGCACTGAGTCAACCCGACTCACCTCGGAAAATCCACTTATCTCCATGGGATCTTGAATCCCTCCCAATCAAGATGAACCAAAAAGGCCTTCTTTTTCACCACAAACCATCATCATCCCAAATTCAACATCTCAAACACTCCCTTTCCACCACCCTGGCACTCTTTCCGCCCCTCGCCGGCCGTCTCATATTAACCGAAGGCGAAGAAAACACCACCTATTGTCACCTTCTCTGCAACAACCAAGGATCCCTCTTTGTCCATGCCATAGCAGAGAACACAAGTGTTGATGACATTCTTCAACCAAAGTGCGTTCCTTCCGTTGTCATCTCCTTCTTCGCCCTTAACGGTGTTAGAAACTTCGAAGGCACATCTCAGCCGTTGCTTGCTGTGCAAGTCACGGAGCTAGTTGACGGCGTCTTCATCGGCTTCACGATCAACCACGTGGTCGCCGACGGCGAATCGTTGTGGCACTTCGTCAATTCATGGTCCGAAATCTCACGTGGTTGCCATAAAGTAACCAAAGATCCTTCACTGGATCGGTTTTTTCTCGATACAATTGAACCTCCAATTCCAATACCAACACCAAAACCCTCTCCATTCACAAAGGAGGAGAATCAGAACTTACCAATAACACCGGTTAGGGTCTTTCATTTCACGAAAGAGAAAACAGCACATCTCAAAACGAAGGCTAATGCAGAGGCCAAAACAGAGAAGATATCTTCGTTGCAAGCACTTTTGACACACTTTTGGACATCCGTAATTCGTTGCCAATTCTTGGACCCGAAAGAAGAGGTTCTCTTTTTCTTGGCAATCGGCGTTAGAGGGCGGATTGTTCCGCCCTTGCCGGAGAATTATTTCGGGAACGCTTTGCAGATTGGTGTTGTGAGAATGAAAGCAGGGGAGCTGCTTCAAGGTGGGATCGGAAAGGGTGCTATGGAGATTAATAAGATGGTGGCTTCTCACAGTCATGAGAAGGTGAGGGGCCACTATGTTTCTATGGCGAAGAAACCGACCTTGCTTCGACTCGGCGGCGCAATTGGGGGGAAGGCTTTGGCCTTTGGAAGCTCGCCAAGGTTCGATGTTTACGGAAATGACTTTGGTTGGGGGAAGCCTGTGGCGGTTAGGGCTGGTTCGAATATGAGTGAGGGAATGGCTGCTTTGTTTGGAGGGAAGGAAGAAGGGAGTGTGGACGTTCAAGTTTGCCTCCCTTATGAGATCTTGGAAGCCATGGAAGGTGATTCTGAGTTCATGGTCACGGATGCCTTTACCGTCTAA 1314 0.4848 MAVIQLISTSTIQALSQPDSPRKIHLSPWDLESLPIKMNQKGLLFHHKPSSSQIQHLKHSLSTTLALFPPLAGRLILTEGEENTTYCHLLCNNQGSLFVHAIAENTSVDDILQPKCVPSVVISFFALNGVRNFEGTSQPLLAVQVTELVDGVFIGFTINHVVADGESLWHFVNSWSEISRGCHKVTKDPSLDRFFLDTIEPPIPIPTPKPSPFTKEENQNLPITPVRVFHFTKEKTAHLKTKANAEAKTEKISSLQALLTHFWTSVIRCQFLDPKEEVLFFLAIGVRGRIVPPLPENYFGNALQIGVVRMKAGELLQGGIGKGAMEINKMVASHSHEKVRGHYVSMAKKPTLLRLGGAIGGKALAFGSSPRFDVYGNDFGWGKPVAVRAGSNMSEGMAALFGGKEEGSVDVQVCLPYEILEAMEGDSEFMVTDAFTV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61196g00003 437 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 430 - -
Stsc61196g00003 437 Gene3D - 211 425 IPR023213 -
Stsc61196g00003 437 Gene3D - 4 201 IPR023213 -
Stsc61196g00003 437 Pfam Transferase family 5 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61196g00003 Stsc-Chr61196 13400 14713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61196g00003 55 424 Monolignol Biosynthesis Gene Families AT5G48930 30.025 1.52e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61196g00003 - - gmx:100797643 503.056