Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61191g00001 ATGGACCAACCTCTTCAACAACAACAACAAACCCCCACCTCCGAGGTCCTTAGGGATTCCGATTCGCACCTTTCTGCAGTTCCCTCCGGTGCTGACGTGGCCGACAGAGGAGCGCCCTCTGCCTGCGCTCCCGCCTTGGAGGTTGCCGTGCCTGACGCCACCTCTTTCAAGAGGAAGCGCGGCCGTCCGGCCAGGGGGGTTCCGAGAGCGACGGCGGCTCCTGCTCCGCTGAGGCAGAAGAAGGAGGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCGTATCATCCTGCCTGTATTAAGCGAGACGAGGCCTTTTTTCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGGTTGTCAGAAGGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAGGGGATGTACAAGAGATGCTGATTTTGTTAGTTTAAGAGGAAATAAAGGATTCTGTGGAATGTGCATGAGAACTATAATGCTGATTGAGAACCCTGGCCAGGAAAATAAGTGCGAAGTTGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGATGTATTGGGTATGTTTGAAAGAGAAGCTATCTTTGACATTGGATGAGCTCCGCCAAGCTAAAAAACCGTGGAGAAGTGCTGCTCCTTTAAGTTGCAAGGTTGAAACTCCCCATCAACTTTATCATCTTAAGGACGACAAAGGTGCTGCTTCTGAGAACTCTTGTATCGACATAGAATTTGATCATTTGACAGACAATAAGCCTAAGAGAAGTGAGAAACAAAGATTTATTTGGGATGGCATCGGGGATGATGTTAGATACCATACACAAAACATGCCAATTACCCGTGAGCTGATTGGAAACATATATACAATACCAAACCAGATCAACCCTAATGTTGTAGCTGTTGTTGATAATACTAATGTAGGGGTTGTGAAATCAGAAGCATCTGGTGCTGCAGTGGACATTTCATCATTGCTTCTCTCAACAGGGATGGAGCAGCCGTTTGACAATTTTGCTAATGATAAGTTGTGGCATTATCAGGATCCTTCGGGCAGGGTTCAAGGACCCTTTTCTATACTGCAGTTGTATAAGTGGAATGCAAGTGGACATTTCCCTCTGGACCTCAGAATATGGAGGACATATGAGACACAAGATAACTCTATATTGTTAGCTGATGCACTAATTGGGAAGTATTCCAAAAATGTATCCTTGCCTTACAACAGCCCGATGTCTTTAGAGTCTAGTGTTACATTGGATAATAAAGAGAACATTCAGGATGGTGGGAGGAATGAAACAAGGGCGGAAATTCATGTTGACAGCCGAATTATTAATTCCAGTGGGGCTGAGAAGGTCGATGATGCCGGTACCCCTTCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGTTTGCATTCTCATTCTTCTAGTTGGAATTTGGCAGTAGACATGAATGAGGGGCAAAGTGGAAATCTTGAAAGGAGAGAGGAGTTGTACAAATGTGAAATTTCAAATCCCGACCAGCCCCATTTGCTACCTTCAACCACCTTTTTGAAGAAACAGAATGAAAGCCCTCCTGATATAGTAAAGGAAGGTCATGGGGTTGAGGGGAACACTGAAGATAACATAAACCATGGCCAGAACAGAACTCCTGAAGGGCAGAGTAATAGTGGGCAGAGTTACCAGAAACAATCCGATTGTGAGGAGAATTCAGGGCAGTCTTCTGGGCAGAACTGGGAGTGCCCTCAAGTAATTAATACAACGTGTAATACATCTATGTGGCAAGCTATCTTTGGCGAACCTGCTGATTTTGGCTCTTTAGTTGATGAATCCGTCTCTGATCTGTTGGCTGAAGTAGAGGCAATGGAGTCACTTGGTGGTGGTGGTGGTTTGGAGTCTCCCACTTCAATCATGAAGTGTGATGATGAATTGACAGATGGTTCTAAAAATGACTGTCTCAGTTTTGCACTTGGCCTTGGCCTTGGTCCCATGCTTGATGCAGGGAAGGGTGATGCAGTGAGTTCAACAGGTGACTTACGTATACCATCATCGCAGTTCACGACAGCGGAAGAACCATTTCGGCATGCTGATGTGCATCAACATCATCAAAGAATACGCGGGGATCATTCTTCTAGTAGTTCTGTAGTTGAGTCTACTTTCACGAGCATTAGCTGGAATCCAACCAATCAATACTCCTGGGATCCTAAATGTTGA 2268 0.4524 MDQPLQQQQQTPTSEVLRDSDSHLSAVPSGADVADRGAPSACAPALEVAVPDATSFKRKRGRPARGVPRATAAPAPLRQKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSGCQKASHYMCYTCTYSLCRGCTRDADFVSLRGNKGFCGMCMRTIMLIENPGQENKCEVDFDDKSSWEYLFKMYWVCLKEKLSLTLDELRQAKKPWRSAAPLSCKVETPHQLYHLKDDKGAASENSCIDIEFDHLTDNKPKRSEKQRFIWDGIGDDVRYHTQNMPITRELIGNIYTIPNQINPNVVAVVDNTNVGVVKSEASGAAVDISSLLLSTGMEQPFDNFANDKLWHYQDPSGRVQGPFSILQLYKWNASGHFPLDLRIWRTYETQDNSILLADALIGKYSKNVSLPYNSPMSLESSVTLDNKENIQDGGRNETRAEIHVDSRIINSSGAEKVDDAGTPSNGKDESVRSNGLHSHSSSWNLAVDMNEGQSGNLERREELYKCEISNPDQPHLLPSTTFLKKQNESPPDIVKEGHGVEGNTEDNINHGQNRTPEGQSNSGQSYQKQSDCEENSGQSSGQNWECPQVINTTCNTSMWQAIFGEPADFGSLVDESVSDLLAEVEAMESLGGGGGLESPTSIMKCDDELTDGSKNDCLSFALGLGLGPMLDAGKGDAVSSTGDLRIPSSQFTTAEEPFRHADVHQHHQRIRGDHSSSSSVVESTFTSISWNPTNQYSWDPKC 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61191g00001 755 FunFam Zinc finger CCCH domain-containing protein 19 76 176 - -
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 479 500 - -
Stsc61191g00001 755 ProSiteProfiles GYF domain profile. 360 414 IPR003169 GO:0005515
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 1 20 - -
Stsc61191g00001 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 175 IPR013083 -
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 522 597 - -
Stsc61191g00001 755 CDD PHD5_NSD 86 131 - -
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 461 500 - -
Stsc61191g00001 755 Gene3D - 362 418 IPR035445 -
Stsc61191g00001 755 SUPERFAMILY GYF domain 359 412 IPR035445 -
Stsc61191g00001 755 CDD GYF 360 415 IPR003169 GO:0005515
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 54 77 - -
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 542 556 - -
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 526 540 - -
Stsc61191g00001 755 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 605 748 - -
Stsc61191g00001 755 SMART gyf_5 361 416 IPR003169 GO:0005515
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 1 38 - -
Stsc61191g00001 755 SMART PHD_3 86 132 IPR001965 -
Stsc61191g00001 755 Pfam GYF domain 363 403 IPR003169 GO:0005515
Stsc61191g00001 755 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Stsc61191g00001 755 SUPERFAMILY FYVE/PHD zinc finger 58 131 IPR011011 -
Stsc61191g00001 755 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Stsc61191g00001 755 MobiDBLite consensus disorder prediction 558 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61191g00001 Stsc-Chr61191 4758 8808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61191g00001 84 172 PHD Transcription Factor Family AT5G36670 33.000 2.25e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61191g00001 - - aip:107642933 1351.27