Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61190g00001 ATGGGGAAAAACGAATTTCTCACACCGAAAGCGATCGCCAATCGAATCAAAGCAAAAGGGCTGCAGAAGCTTAGGTGGTACTGCCAGATGTGCCAGAAGCAATGCCGAGACGAGAATGGGTTCAAATGCCACTGCATGAGTGAAGGGCACCAGCGCCAGATGCAGATTTTCGGCCAAAACCCACATCGGATCGTCGAGGGTTATTCCGAGGAGTTTGAAAGTTCTTTCCTTGAGCACATGAAGCGCAGCCATCGGTTCAGCCGCATTGCTGCCACCGTGGTTTACAACGAGTACATCAATGACAGGCATCATGTTCATATGAACTCCACTCAATGGGCAACTCTTACTGAGTTTGTCAAGTACTTGGGTCGAACCGGGAAGTGTAAGGTTGAGGAAACCCCCAAGGGTTGGTTCATTACTTATATAGATAGAGATTCTGAGACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCGGATATGGTGGAGGAAGAGAAGCAAGAGAAGGAGATTATGAAACAGATTGAAAAGGCTGCGCAACTGATGCAACGGCCAGATACTACCGAGTCTGATCAGGCTTCACAGGTTGAGGCACCGAGGGAACTAAATGTGGAAGATGGAGTTAAGATAGGGTTTTCTCTTGGGGCATCAGCTAAGCCTGTGATCAAAGAGAAACCTGAGGGATCGAAGAAGGTTGTGTTTGATGAGGTTGAGGAAGACAAATACGAGGAAAGGAATCCGGGAAATAGTTTGAAGAGGAAAGAGAGTGGCGGTGGAGGAAAATCAACTTTGGAAGAATTGATTAGGGAAGAAGAGAAGAAAAAGGAGAAAATCAACAGGAAAGACTATTGGTTGCATGAGGGGATCATTGTTAAGGTAATGAGCAAGGCCTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGTGTGGTGAGAAAGGTGATTGACAAATATGTTGGGGAAATTGAAATGCTTGAAAGCAAGCATGTACTGAGAGTCGATCAGGAAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGCCGTGTAAAAATCGTCAACGGTGCATATCGTGGATCAATTGCGAAGCTTTTGGGGGTGGATACAGATCATTTTTGTGCAAAGGTGCAGATAGAGAAAGGTGCCTATGATGGTAGGGTACTCAAAGCTGTGGAATATGAAGACATTTGTAAAATAGCACAATGA 1206 0.4552 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRIAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMVEEEKQEKEIMKQIEKAAQLMQRPDTTESDQASQVEAPRELNVEDGVKIGFSLGASAKPVIKEKPEGSKKVVFDEVEEDKYEERNPGNSLKRKESGGGGKSTLEELIREEEKKKEKINRKDYWLHEGIIVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDHFCAKVQIEKGAYDGRVLKAVEYEDICKIAQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61190g00001 401 FunFam DNA/RNA-binding protein KIN17, putative 344 400 - -
Stsc61190g00001 401 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Stsc61190g00001 401 Gene3D - 290 343 - -
Stsc61190g00001 401 Coils Coil 263 283 - -
Stsc61190g00001 401 CDD KOW_KIN17 346 399 IPR041995 -
Stsc61190g00001 401 FunFam DNA/RNA-binding protein kin17-like 290 343 - -
Stsc61190g00001 401 Pfam KN17 SH3-like C-terminal domain 282 335 IPR041330 -
Stsc61190g00001 401 Gene3D - 344 400 IPR014722 -
Stsc61190g00001 401 SMART Kin17_mid_2 52 178 IPR019447 -
Stsc61190g00001 401 Coils Coil 154 186 - -
Stsc61190g00001 401 MobiDBLite consensus disorder prediction 181 201 - -
Stsc61190g00001 401 Gene3D - 60 160 IPR038254 -
Stsc61190g00001 401 MobiDBLite consensus disorder prediction 183 199 - -
Stsc61190g00001 401 MobiDBLite consensus disorder prediction 240 267 - -
Stsc61190g00001 401 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Stsc61190g00001 401 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Stsc61190g00001 401 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 399 IPR037321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61190g00001 Stsc-Chr61190 305 2112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61190g00001 1 400 C2H2 Transcription Factor Family AT1G55460 70.913 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61190g00001 K13102 - gmx:100785931 701.434