Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61179g00004 ATGGGAAGAGAAGCCCCCAAGCAGCAGCAGCCGCCGGTTGCATACACAGTGGAGCAGCTTGTTGCCGTAAATCGATATAATCCCGATATTCTTCCCGATCTCGAAAACTATGTCAATGAACAGGTTTCATCGCAAACCTACAGCCTCGACGCAAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCGGAGAAAATGAGTTCTCAGATTGTTGCCCGCATTTTGGTTAAGGCTCTTATGGCAATGCCAGCTCCAGATTTCAGCCTGTGTCTCTTTTTGATTCCTGAGCGTGTGCAAATGGAGGAGCAATTTAAGACACTGATTGTTCTCTCACACTATTTGGAGACTGGAAGGTTTCGTCAGTTCTGGGATGAAGCAGCAAAAAATCGTCATATAGTTGAAGCCGTTCCAGGATTTGAGCAGGCTGTCCAAGGCTATGCTATTCACGTCCTATCCTTGACTTACCAAAAGGTTCCTAGAGCTGTGCTTGCTGAGGCAATCAACATAGAAGGTTTATCCTTGGACAAATTCCTCGAACACCAAGTAGCTAACTATGGTTGGGCAATAGAGAAGACCCAAGGCAAGGGTCAGCTCATTGTTCTTCCTAAAAATGAATTTAATGACCCAGTTTTGAAGAAAAACTCCTCAGATAGTGTACCATTGGAGCACATTACTCGCATCTTTCCCATTCTTAGTTGA 699 0.4506 MGREAPKQQQPPVAYTVEQLVAVNRYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKNRHIVEAVPGFEQAVQGYAIHVLSLTYQKVPRAVLAEAINIEGLSLDKFLEHQVANYGWAIEKTQGKGQLIVLPKNEFNDPVLKKNSSDSVPLEHITRIFPILS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61179g00004 232 ProSiteProfiles PCI domain profile. 47 206 IPR000717 -
Stsc61179g00004 232 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 8 229 IPR009374 GO:0003743|GO:0005737|GO:0005852
Stsc61179g00004 232 Pfam CSN8/PSMD8/EIF3K family 67 194 IPR033464 -
Stsc61179g00004 232 Gene3D ARM repeat; domain 1 12 125 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Stsc61179g00004 232 FunFam Eukaryotic translation initiation factor 3 subunit K 8 125 - -
Stsc61179g00004 232 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 232 IPR009374 GO:0003743|GO:0005737|GO:0005852
Stsc61179g00004 232 SUPERFAMILY "Winged helix" DNA-binding domain 137 229 IPR036390 -
Stsc61179g00004 232 Gene3D - 128 231 IPR036388 -
Stsc61179g00004 232 FunFam Eukaryotic translation initiation factor 3 subunit K 128 231 - -
Stsc61179g00004 232 SUPERFAMILY ARM repeat 14 135 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61179g00004 Stsc-Chr61179 22140 24299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61179g00004 1 232 Eukaryotic Initiation Factors Gene Family AT4G33250 74.786 1.18e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61179g00004 K15028 - gmx:100306445 411.764