Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61168g00002 ATGTCGCAGGAGCTGAAGGCCAAGCCTCAGAATTTCAAACCTAGCTCAGTGGCATCGTGGGAGAATGGCACGCCTGTGCCGTTCTCGTTACTGGCGTCGGCGCTTGACATGATTGATAAGGAGTCTGGGAGAATGGCGAGAACAGATATTGCTTGCAATTTGATGCAAACTGTGATATACTCTACCCCTGAGGATCTTCTGCCTCTGATGTATCTCTTGGGGAAGAAGGTTGCTCCTGCTCATGAAGGTGTGGAACTGGGAATTGGCGAGCCTTCGATTATTCTGGCACTTGCTGAGGCAACTGGAAGAACTAAACCAACAATCAAGAAGCTGGACAAGAAACTGGGTGATTTGGGATTAGTTGCCAAGAAATGCCGTCCACTTCAGCCTATTTTTGGCAGGAAGCCTGAGCCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGTGATATTGCCAAGGAATCTGGAAAAGCTAGTCAAGAGAAGAAAGAGAATCATATAAAGGGACTTGTTGTTGCTGGAAATGATTGTGAACGTCAATATCTTATCCGTCTTCTGCAGGGAAAGTTGCGGATTGGTATGGGTGATCAAACACTCTTAGCTGCATTAGCCCAGGCAGCAGTATATACTGAAGAACATTCTAAACCACCTGCTGATATTAAGTCTCCTGTGGAAGAAGCTGTAAAAATTGTCAAACAAGCCTATTCTGTTGTTCCTGTTTACGACAAAATAGTATCTGCACTGCTTACGCATGGTGTATGGAAACTTCCATCAACATATAATTTCACTCCTGTAAAGGATGTGGAGTTCACTTGCGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCCGAGCGGAATACTGGGAAGTATCCTGATGTTGTCGCTGCAATTTCAAGGGTAAAGAAATCAACTGTATCATCATTTGTCCTTGATTGTGAAATTGTTGGATATGATCGTGAAAAACAGACGATCCGTTCTTTCCAGGATCTTAGTGGTCGGCCTCGTAAAAATGTATCCATGGATAATATAAAGGTTGACGTCTGTATATTTGCTTTTGATATACTATATCTTAATGGCCGAGCACTTCTTCAGGATAACCTGAAAATCCGTCGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGAAACGGCAATAACATCAAATGACATCGAGGAAATACAGGAATTTCTCGACCAAGCTGTTGCTTCAAGCTGTGAGGGATTAATCATTAAAACATTAGATGAAGATTCTACATATGAACCTTCCAATCGATCACAAAATTGGCTAAAACTGAAAAAAGACTATCTGAACAACATAGGGGACTCACTAGATTTGGTACCTATAGCCGCATTCCACGGACGTGGGAAACGTACAGGTGATCATAAAGGACAGTGTATTGTTCCCGGGCCAAAGTCATACTATCGGTATGGGGAGACAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACCATTAGCCCAGTTCACCGTGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCTCGGCTAGTTCGAGTTCGACCTGACAAAAAACCTGAGGAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGCTCAATTTTTGACTCAAACACAAACAAACAAACAGGATGGCAGTGATTCACCAAAAACACAGGATGGCGGTGAAGATGAAGATGTAGATGAGTGA 1803 0.4304 MSQELKAKPQNFKPSSVASWENGTPVPFSLLASALDMIDKESGRMARTDIACNLMQTVIYSTPEDLLPLMYLLGKKVAPAHEGVELGIGEPSIILALAEATGRTKPTIKKLDKKLGDLGLVAKKCRPLQPIFGRKPEPLTIRKVFNTFRDIAKESGKASQEKKENHIKGLVVAGNDCERQYLIRLLQGKLRIGMGDQTLLAALAQAAVYTEEHSKPPADIKSPVEEAVKIVKQAYSVVPVYDKIVSALLTHGVWKLPSTYNFTPVKDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKYPDVVAAISRVKKSTVSSFVLDCEIVGYDREKQTIRSFQDLSGRPRKNVSMDNIKVDVCIFAFDILYLNGRALLQDNLKIRREHLYASFEEETGVFQYETAITSNDIEEIQEFLDQAVASSCEGLIIKTLDEDSTYEPSNRSQNWLKLKKDYLNNIGDSLDLVPIAAFHGRGKRTGDHKGQCIVPGPKSYYRYGETMKPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKKPEEASSSEQVAEMYNAQFLTQTQTNKQDGSDSPKTQDGGEDEDVDE 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61168g00002 600 Pfam ATP dependent DNA ligase domain 267 453 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc61168g00002 600 Gene3D - 2 265 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc61168g00002 600 CDD Adenylation_DNA_ligase_I_Euk 265 456 - -
Stsc61168g00002 600 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 260 459 - -
Stsc61168g00002 600 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 3 480 - -
Stsc61168g00002 600 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 273 281 IPR016059 GO:0003909
Stsc61168g00002 600 Gene3D DNA ligase/mRNA capping enzyme 278 403 - -
Stsc61168g00002 600 SUPERFAMILY Nucleic acid-binding proteins 461 571 IPR012340 -
Stsc61168g00002 600 Gene3D - 266 458 - -
Stsc61168g00002 600 MobiDBLite consensus disorder prediction 551 600 - -
Stsc61168g00002 600 ProSitePatterns ATP-dependent DNA ligase signature 2. 427 453 IPR016059 GO:0003909
Stsc61168g00002 600 FunFam DNA ligase 278 403 - -
Stsc61168g00002 600 Pfam DNA ligase N terminus 27 204 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc61168g00002 600 CDD OBF_DNA_ligase_I 461 570 - -
Stsc61168g00002 600 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 9 259 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc61168g00002 600 Gene3D - 481 572 IPR012340 -
Stsc61168g00002 600 MobiDBLite consensus disorder prediction 562 586 - -
Stsc61168g00002 600 Pfam ATP dependent DNA ligase C terminal region 498 553 IPR012309 GO:0003910|GO:0006281|GO:0006310
Stsc61168g00002 600 ProSiteProfiles ATP-dependent DNA ligase family profile. 355 480 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc61168g00002 600 NCBIfam ATP-dependent DNA ligase 269 480 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61168g00002 Stsc-Chr61168 6322 11469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61168g00002 5 571 Core DNA Replication Machinery Family AT1G08130 61.058 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61168g00002 K10747 - gmx:100783155 811.216