Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61168g00001 ATGGCTGAAAACACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTATATACTGAAAAACATTCTACACCTCCTGCTGATATTAAGTCTCCTGTAGAAGAAGCTGTAAAAATTGTCAAACAAGCCTATTCTGTTGTTCCTGTTTACGACAAAATAGTATCTGCACTGCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTCACTCCTGGTATTCCAGTTGGACCTATGCTGCCAAAACCAACGAAGGGTTTCTCTGATATTCTAAATTCAGTAAAGGATGTGGAGTTCACTTGCGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTTCATGGAAACTGGTTCAGTTGAGATTTATGGTAGAAATGCCGAGCGGAATACTGGGAAGTATCCTGATGTTGTCGCTGCAATTTCAAGGGTAAGGAAATCAACTGTATCATCATTTGTCCTTGATTGTGAGATTGTTGGATATGATCGTGAAAAACAGACGATCCGTTCTTTCCAGGAACTTAGTGGCCGGCCTCGTGAAAATGTATCTATGGGTAATATAAAGGTTGACGTCTGCATATTTGCTTTCGATATACTGTATCTTAATGGCCGAGCACTTCTTCAGGATAACCTGAAATTCCGTAGAGAGAATCTTTATGCATCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAACGACATCCAGGAAATACAGGGATTTCTCGACCAAGCTGTTGCTTCTAGCTGTGAGGGATTAATCATTAAAACATTAGATGAAAATTCTACATATGAACCTTCCATTCGGTCAAACAATTGGCTAAAACTGAAGAAAGATTGTGTGAACAACATAGGGGACTCACTAGATTTGGTACCTATAGCCGCATTCCACGGGCGTGGGAACCGTACAGGAGTGTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACGGGATTTACTGAACAAGACCTTGAACAGTGTTCTACTAGTCTTCGACCTAAAGTGATTTCTGGGCCAAAGTCATACTATCGGTATGGAGATACAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAGGCTGCAGATCTGACCATTAGTCCAGTTTACCGTGCTGCAGTGGGCATAGTAGATTCAGATAAG 1203 0.409 MAENTLLAALGQAAVYTEKHSTPPADIKSPVEEAVKIVKQAYSVVPVYDKIVSALLTHGVWKLPSTCNFTPGIPVGPMLPKPTKGFSDILNSVKDVEFTCEYKYDGERAQIHFMETGSVEIYGRNAERNTGKYPDVVAAISRVRKSTVSSFVLDCEIVGYDREKQTIRSFQELSGRPRENVSMGNIKVDVCIFAFDILYLNGRALLQDNLKFRRENLYASFEEETGVFQYATAITSNDIQEIQGFLDQAVASSCEGLIIKTLDENSTYEPSIRSNNWLKLKKDCVNNIGDSLDLVPIAAFHGRGNRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEQDLEQCSTSLRPKVISGPKSYYRYGDTMKPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61168g00001 401 CDD Adenylation_DNA_ligase_I_Euk 66 283 - -
Stsc61168g00001 401 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 2 401 - -
Stsc61168g00001 401 FunFam DNA ligase 286 401 - -
Stsc61168g00001 401 NCBIfam ATP-dependent DNA ligase 2 393 IPR000977 GO:0003910|GO:0005524|GO:0071897
Stsc61168g00001 401 FunFam DNA ligase 106 231 - -
Stsc61168g00001 401 CDD OBF_DNA_ligase_I 289 401 - -
Stsc61168g00001 401 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 69 286 - -
Stsc61168g00001 401 ProSitePatterns ATP-dependent DNA ligase signature 2. 255 281 IPR016059 GO:0003909
Stsc61168g00001 401 SUPERFAMILY Nucleic acid-binding proteins 289 399 IPR012340 -
Stsc61168g00001 401 Gene3D - 1 79 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc61168g00001 401 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 101 109 IPR016059 GO:0003909
Stsc61168g00001 401 ProSiteProfiles ATP-dependent DNA ligase family profile. 183 319 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc61168g00001 401 Gene3D DNA ligase/mRNA capping enzyme 106 231 - -
Stsc61168g00001 401 Gene3D - 87 285 - -
Stsc61168g00001 401 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 1 67 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc61168g00001 401 Pfam ATP dependent DNA ligase domain 77 281 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc61168g00001 401 Gene3D - 290 401 IPR012340 -
Stsc61168g00001 401 Pfam ATP dependent DNA ligase C terminal region 306 392 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61168g00001 Stsc-Chr61168 411 4052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61168g00001 4 401 Core DNA Replication Machinery Family AT1G08130 70.603 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61168g00001 K10747 - gmx:100783155 624.78