Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61165g00001 ATGGAGGAAGCACTCCGCCGCCTCAACCCCATCACCCACCTTCCCCAACCCGACCCACCCCTCACCACCCAATGCTCCTCCTCCACCAAGCGAGCCCTTCAAAAGAACGCTCCTTCCGCCGGCGGAGCCATGAGGTACCGGGGTGTAAGGCGGAGGCCATGGGGCCGTTATGCCGCCGAGATAAGGGACCCTCAATCTAAGGAGCGCCGTTGGCTGGGGACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGTGGGATCAAGGCGAGAACCAACTTTGTGTACCCTGCTTCCCCTACTCACCCTTCTTCCGTCTCCGTCACCACCAAAAACAGTTATAAAAACCTCCTTAACCGCCATAACCAACTCTTCGCTCGCCAGTTTAGCTTCCCCAGGCATCATAATAACCAACTCTTTAACGTCCGTAACCGCCACTTGGGTGGTTGTTGGCCTGACCCCTTCTCCTCCTATTCTTCTTCTTCTTCTTCCTTTTCAACCCTCCAACAGCAGGACCGAAACCAGCAATTTAACTCCATCAACATGCTCCTCCTCCGTGACTTCATAGCCTCCACCTCCTCCTCCTCTTCTTCTTCTTCTTCCTTCTCCTCTTGCACCAACCCTACTTCTCTTTCATCTTCCTTTAACCACCATTTATCCTACCCCAAGGCTGATGAGAATAAATACTCGCAAGAATTCTTTCAACACTCGGACTCATCATCGGGGTTGTTGGAAGAGATAGTTAGCGGTATCTTGAAAAATCCCAAGCCCGCTAATAAAAGCGAGTCTTTGTTGTTAAACACACCTACTTCTGCATCAGAAGGTTCTTGCCACGTTGACACTGAGTCATTTCCTCCTCCTCTTCCTCCTCTTTCCGGCAAGAAAGACGAGGGTTTTAATGCTCCTTTGTATCAAGATGCTTTCCACATGCAGCAACTTGGTGGTTTCAATTTCAACGGGTTTAGCATGGTGTCGTCCACCAGCATGCCTCTTATGCAGGAGGAGAACAATAAGAATGAAATGATTAATAATAATAATAACGATGATGATGATGATCATAATAATGCAGAATGGCCTATCATGGAAGACATTTTTCATCAGTACCCGGACTTTCTTAATTAA 1143 0.4969 MEEALRRLNPITHLPQPDPPLTTQCSSSTKRALQKNAPSAGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPASPTHPSSVSVTTKNSYKNLLNRHNQLFARQFSFPRHHNNQLFNVRNRHLGGCWPDPFSSYSSSSSSFSTLQQQDRNQQFNSINMLLLRDFIASTSSSSSSSSSFSSCTNPTSLSSSFNHHLSYPKADENKYSQEFFQHSDSSSGLLEEIVSGILKNPKPANKSESLLLNTPTSASEGSCHVDTESFPPPLPPLSGKKDEGFNAPLYQDAFHMQQLGGFNFNGFSMVSSTSMPLMQEENNKNEMINNNNNDDDDDHNNAEWPIMEDIFHQYPDFLN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61165g00001 380 MobiDBLite consensus disorder prediction 18 35 - -
Stsc61165g00001 380 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Stsc61165g00001 380 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Stsc61165g00001 380 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Stsc61165g00001 380 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Stsc61165g00001 380 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Stsc61165g00001 380 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Stsc61165g00001 380 MobiDBLite consensus disorder prediction 1 45 - -
Stsc61165g00001 380 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Stsc61165g00001 380 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Stsc61165g00001 380 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Stsc61165g00001 380 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61165g00001 Stsc-Chr61165 4157 5457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61165g00001 1 260 AP2-EREBP Transcription Factor Family AT1G12980 39.852 1.18e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc61165g00001 AP2 4.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61165g00001 - - aip:107641557 268.47