Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61163g00006 ATGAATTTCAATAGCACTCATTCATCATCATCATCAGCATCTCCACCAAATTCTATGCCAATGCCTCGTTATCCACTTCCTCAGGACACCCAAGAAGATAAAGAGAAGTTGGCTTTGGAGCAATTTTGGTACCAACAGTTCACAAATATTCAAAGTAAAGAAGCGACCCGACAGCAGTTGCTTCCGGTTAGGGTCAAGAAGATCATGAAAGCGGATCAGAGCAACAAGATAACAATAAGTTCAGAAGCTCCATTGTTGTTGGCAAAAGCATGTGAAGTGTTGATTGAGGAACTGACATTTAGAGCATTGATTCGTGCTGAATCTAACAAGAGAAGAACCCTTCAACTCAGTGACATTGTCATGGCTATTAAGAAAGACAAACTCCTTAACAACTTCTTCTCTACTCTTGCTAATAATTCTTCCCATCATCACCATCACTTCCTTCATTCCAAGGAAATGGTGTTAAGAAATCAAGAATTTGCTCCTCAAAATCAATATGAGACAATTCATCAGGATTCATATCAGTCCTTTAATAATGATCAATTATTTAACATGATGCAATATTATTTGCCATCTGAGATGATGAAGCAGCTGCCTCAATTTCTTCCATTATCTAATCAGCCAAATAGTATTCACAGCGATGAGATGATGAAATATATGGCATATGATCATGATCATCATCATCAACAATTTCAAACAATGCAGCAGCCCCATTATTATTTGCCTTCTAATGATGCATTTCCTTACAATTATTTTCACCCCAAGTGA 768 0.3724 MNFNSTHSSSSSASPPNSMPMPRYPLPQDTQEDKEKLALEQFWYQQFTNIQSKEATRQQLLPVRVKKIMKADQSNKITISSEAPLLLAKACEVLIEELTFRALIRAESNKRRTLQLSDIVMAIKKDKLLNNFFSTLANNSSHHHHHFLHSKEMVLRNQEFAPQNQYETIHQDSYQSFNNDQLFNMMQYYLPSEMMKQLPQFLPLSNQPNSIHSDEMMKYMAYDHDHHHQQFQTMQQPHYYLPSNDAFPYNYFHPK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61163g00006 255 MobiDBLite consensus disorder prediction 1 31 - -
Stsc61163g00006 255 Pfam Core histone H2A/H2B/H3/H4 48 125 IPR007125 GO:0003677
Stsc61163g00006 255 MobiDBLite consensus disorder prediction 1 17 - -
Stsc61163g00006 255 SUPERFAMILY Histone-fold 12 128 IPR009072 GO:0046982
Stsc61163g00006 255 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 134 - -
Stsc61163g00006 255 Gene3D Histone, subunit A 24 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61163g00006 Stsc-Chr61163 25899 28484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61163g00006 39 139 CCAAT-HAP5 Transcription Factor Family AT1G56170 43.137 1.91e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc61163g00006 Histone 1.9e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61163g00006 K08066 - rvl:131311144 91.2781