Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61151g00001 ATGACATTAGCCGCCGCTGACCACCACAGCCACGGCGACAATAACCCCGGCGAACTCTTCTACGAGTCCCTTGACAGGCTACTATCCTCCTCTGAATGCTCGACCTCCACTACCTCCGACACCGAACAAGAACCGCCACAACACCACCACCACCACACCAAGGGGGACGACGGAATTTATAATTATGCCCTCGCTCTCAACAACAGCTACGACATCTGGATCTCTCATCCTTCCTCCGTCTCCGAGCGACGTTCCTCCCTCCTCCGACATCTCGGCCTCGCCGCACCCTCGCCGCCACGCGATAATGGGGACTCTTCCCGATCGCCGTCGTCGTCGGATCAGGTGAGTGGCCTGCGACAGGGTTACGCCGGAGAGATGCTCCGATCGAAGTCTGACGGCGCAGCGGATCCTGAGAATTCCGGTGATGGTGATGATGATGATGAAAAAACTTGTGATTCTTGTTTTCTTTCGCGTTCGTCTTGTCGTTGCTGTCGTTCTTGCTCGTCCTCTCCTTCCATTCTTTCCATTCGTTCGGCCGTGCCGGAGGCCGGAAAATCTGTAAATAGCCGGAATCGTCGCAGTGGTAGTGTTGGTGGTGGTGGCGGCGGAAATGGTGGGTCCCCCTGGAAGCCTCCTTCGGGGAGGAACGGAAAAAGTGTGGATTTTGGGCAGAACGGGTCCTTGGTGCCGGAGAATCTCGGCGATGAGGCGGTTGCTACGGCAGCAGAGATGGTGGCTACCGGGGATTATGAGGGCGTCAATGAAGAGGCTTGCACCATAAGGGATCTTGACAATGGGAAAGAGTTTGTGGTGAAAGAGTTTAGAGAAGATGGCATCTGGAACAGGTTCAGGGAGGTTGGTACAGGCCGGCAACTGACAATGGAGGAGTTCGAAATGACGGTCGGTCACTCGCCGATTGTCCAGGAGCTCATGAGGAGGCAGAACGTGGAGGAAAGCCATGGGAAGGACAATGTGGATTTAATTGGCAATGAAGGTGGCAGTGGAAACAATGGTTCCAAGATGAAGAAGAGAGGGAGTTGGTTGAGGGCCTTAAAATCCGCGATGGGGACACATAAGGAGCGGCGAAGCAGCGACGAGAGGGACACCTCGTCGGAGAAGGGGGGAAGGAGGTCAAGCTCCGCCACGGATGACAGCCAGGATAATGCCTCATTCCATGGACCTGAGAAAGTTAAGGTTAGGCAGTATGGGAAGCCATGTAAGGAGGTGACAGCACTTTACAAGAGCCAGGAGATTCAGGCTCATAATGGATCTATATGGACTATTAAGTTTAGCTTAGATGGGAAGTATTTGGCGAGTGCCGGCGAGGATTGTGTGATCCATGTGTGGCAAGTTGTGGAGACTGAGAGGAAGGGGGAGCTGCTGATGGAGAAACATGATGATGGGAATATGAACATGTTGTTCGTTGTGAATGGTTCATCCCTGGAGCCGAATCTGCTGTCCCCTCTCATGGACAAGTCTCCTCATCATCCAGAGAGGAAGAGGAAGGGGAGGACATCCATTAGCAGGAAATCGTTGAGCTTGGATCAATTAGTGATACCGGATACCGTGTTTGCGCTCACCGAGAAACCCATTTGCTCCTTTCAGGGACATCTTCATGATGTGCTTGACCTGTCTTGGTCCAAATCTCAGCACTTGCTCTCATCGTCAATGGACAAAACGGTGCGATTGTGGCATTTGTCTAGCAACACTTGTCTGAAAGTTTTTTCACACAGTGACTTTGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCCTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATAGGCAGGTTGTTGATTGGACTGATATGCATGAGATGGTTACTGCTGCTTGTTATACACCCGATGGTCAGAGTGCACTGGTTGGTTCTTACAAGGGTAGTTGCCACTTATATAACACATCTGAAAATAAGTTGCAACAAAAAAGTCAGATCAATCTGCAGAACAGGAAGAAGAAATCACATCTTAAAAAGATTACAGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAGGTACTTATCACATCTGCAGATTCGCGAATTCGTGTTGTTGATGGTGTTGATCTGGTTCACAAATTTAAAGGGTTCCATAATTCATCAAGCCAAATTTCAGCCTCTCTGACAGCCAACGGTAAATATGTTGTCTCCGCAAGCGAGGATTCACATGTGTACATATGGAAAAATGAAGCGGATTGTAGGCCTAACAGAAGTAAAGGTGTCACTGTCACAGGCGCATACGAACATTTCCACTGTAAAGATGTTTCAGTGGCCATTCCGTGGCCAGGTATGGGCGATGCCTGGGACATCCATGATACACTTTCTGGAGAGCAAACTGNNNNNNNNNNCGGATGA 2397 0.499 MTLAAADHHSHGDNNPGELFYESLDRLLSSSECSTSTTSDTEQEPPQHHHHHTKGDDGIYNYALALNNSYDIWISHPSSVSERRSSLLRHLGLAAPSPPRDNGDSSRSPSSSDQVSGLRQGYAGEMLRSKSDGAADPENSGDGDDDDEKTCDSCFLSRSSCRCCRSCSSSPSILSIRSAVPEAGKSVNSRNRRSGSVGGGGGGNGGSPWKPPSGRNGKSVDFGQNGSLVPENLGDEAVATAAEMVATGDYEGVNEEACTIRDLDNGKEFVVKEFREDGIWNRFREVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEESHGKDNVDLIGNEGGSGNNGSKMKKRGSWLRALKSAMGTHKERRSSDERDTSSEKGGRRSSSATDDSQDNASFHGPEKVKVRQYGKPCKEVTALYKSQEIQAHNGSIWTIKFSLDGKYLASAGEDCVIHVWQVVETERKGELLMEKHDDGNMNMLFVVNGSSLEPNLLSPLMDKSPHHPERKRKGRTSISRKSLSLDQLVIPDTVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNTCLKVFSHSDFVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDMHEMVTAACYTPDGQSALVGSYKGSCHLYNTSENKLQQKSQINLQNRKKKSHLKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFHNSSSQISASLTANGKYVVSASEDSHVYIWKNEADCRPNRSKGVTVTGAYEHFHCKDVSVAIPWPGMGDAWDIHDTLSGEQTXXXXG 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61151g00001 798 Gene3D - 513 763 IPR015943 GO:0005515
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 1 20 - -
Stsc61151g00001 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 608 IPR001680 GO:0005515
Stsc61151g00001 798 FunFam Transducin/WD40 repeat-like superfamily protein 375 480 - -
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 313 399 - -
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 485 505 - -
Stsc61151g00001 798 SUPERFAMILY WD40 repeat-like 413 743 IPR036322 GO:0005515
Stsc61151g00001 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 451 IPR001680 GO:0005515
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 31 57 - -
Stsc61151g00001 798 Coils Coil 798 798 - -
Stsc61151g00001 798 PANTHER WD REPEAT DOMAIN 44 18 780 IPR040324 -
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 43 57 - -
Stsc61151g00001 798 Gene3D - 357 481 IPR015943 GO:0005515
Stsc61151g00001 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 568 - -
Stsc61151g00001 798 Pfam WD domain, G-beta repeat 570 607 IPR001680 GO:0005515
Stsc61151g00001 798 Pfam WD domain, G-beta repeat 417 449 IPR001680 GO:0005515
Stsc61151g00001 798 Pfam WD domain, G-beta repeat 704 742 IPR001680 GO:0005515
Stsc61151g00001 798 Pfam WD domain, G-beta repeat 529 564 IPR001680 GO:0005515
Stsc61151g00001 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 608 - -
Stsc61151g00001 798 FunFam WD repeat-containing protein 44 515 781 - -
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 354 380 - -
Stsc61151g00001 798 SMART WD40_4 655 700 IPR001680 GO:0005515
Stsc61151g00001 798 SMART WD40_4 701 742 IPR001680 GO:0005515
Stsc61151g00001 798 SMART WD40_4 568 607 IPR001680 GO:0005515
Stsc61151g00001 798 SMART WD40_4 609 648 IPR001680 GO:0005515
Stsc61151g00001 798 SMART WD40_4 411 450 IPR001680 GO:0005515
Stsc61151g00001 798 SMART WD40_4 527 565 IPR001680 GO:0005515
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 90 149 - -
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 184 231 - -
Stsc61151g00001 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 574 IPR001680 GO:0005515
Stsc61151g00001 798 PRINTS G protein beta WD-40 repeat signature 552 566 IPR020472 -
Stsc61151g00001 798 PRINTS G protein beta WD-40 repeat signature 594 608 IPR020472 -
Stsc61151g00001 798 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Stsc61151g00001 798 MobiDBLite consensus disorder prediction 101 118 - -
Stsc61151g00001 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61151g00001 Stsc-Chr61151 9789 15834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61151g00001 521 739 U-box Gene Family AT2G33340 24.790 8.85e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61151g00001 K20241 - qsa:O6P43_000927 909.057